Actinomadura latina (DSM 43382, ATCC BAA-277, JCM 10674)

Name: Actinomadura latina (DSM 43382, ATCC BAA-277, JCM 10674)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16981

Type strain

Strain Designation 1065, A 10

Culture col. no. DSM 43382 ATCC BAA-277 JCM 10674 CCUG 48293 IFM 0961 7 more

NCBI tax ID(s) 1220563 163603

Special Collections DSMZ CCUG JCM JMRC

History DSMZ <- M. Goodfellow, A 10, (Actinomadura pelletieri) <- C. Philpot, 1065, London School of Hygiene and Tropical Medicine <- E.C. Smith JCM <-- DSM 43382 <-- M. Goodfellow A10 <-- C. Philpot 1065 <-- E. C. Smith.

Links

Actinomadura latina 1065 is an aerobe bacterium that was isolated from arm of patient.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 50261

NBRC 106108,DSM 43382,ATCC BAA-277,JCM 10674,CCUG 48293

@ref 20215

Last LPSN update 2026-05-29 08:28:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura latina

Full scientific name Actinomadura latina Trujillo and Goodfellow 1997

BacDive ID	Other strains from **Actinomadura latina** (3)	Type strain
16982	A. latina A 116, A 167, LSTHM 1067, RNSH 203, DSM 46198, ...
16983	A. latina A 122, N281, DSM 46199, IMET 9700
16984	A. latina A 116, A 167, LSTHM 1067, RNSH 203, DSM 46201, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.722
125439		93.579
125438	positive	90.163

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10999	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10999	positive	growth	28
58070	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
58070	aerobe
125438	aerobe	91.112
125439	obligate aerobe	99.588

Spore formation

@ref	Spore formation	Confidence
125439		91.136

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Patient

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Host species
10999	arm of patient				Homo sapiens
67770	Mycetoma of the arm	Nigeria	NGA	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10999	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM155219v1 assembly for Actinomadura latina NBRC 106108	contig	GCA_001552195	1220563.3	2731957574	1220563	59.84
67770	ASM1239639v1 assembly for Actinomadura latina ATCC BAA-277	contig	GCA_012396395	163603.4	8110760563	163603	36.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Actinomadura latina 16S ribosomal RNA gene, partial sequence	AY035998	1452		163603

GC content

@ref	GC-content (mol%)
10999	67
67770	67.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM155219v1 assembly for Actinomadura latina NBRC 106108
BV-BRC: 1220563.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.59	no
125439	gram_stain	BacteriaNetⓘ	positive	99.72	no
125439	motility	BacteriaNetⓘ	no	93.58	no
125439	spore_formation	BacteriaNetⓘ	yes	91.14	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomadura latina NBRC 106108
PATRIC: 1220563.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.16	no
125438	anaerobic	anaerobicⓘ	no	94.25	yes
125438	spore-forming	spore-formingⓘ	yes	85.58	no
125438	aerobic	aerobicⓘ	yes	91.11	yes
125438	thermophilic	thermophileⓘ	no	92.56	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	A Rare Strain Actinomadura geliboluensis Was First Isolated from the Bronchoalveolar Lavage Fluid of a Patient with Pneumonia.	Yu Y, Yang G, Wang Y, Jin F, Wang H, Yu Z, Li L, Li X, Gao J, Xu W.	Infect Drug Resist	10.2147/idr.s409701	2023
Enzymology	Discovery, characterization, and synthetic potential of two novel bacterial aryl-alcohol oxidases.	Cinca-Fernando P, Ascaso-Alegre C, Sevilla E, Martinez-Julvez M, Mangas-Sanchez J, Ferreira P.	Appl Microbiol Biotechnol	10.1007/s00253-024-13314-z	2024
Enzymology	Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation.	Wang Y, Lin S, Li J, Jia X, Hu M, Cai Y, Cheng P, Li M, Chen Y, Lin W, Wang H, Wu Z.	Front Plant Sci	10.3389/fpls.2023.1324184	2023
	Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities.	Watson AK, Kepplinger B, Bakhiet SM, Bakhiet SM, Mhmoud NA, Chapman J, Allenby NE, Mickiewicz K, Goodfellow M, Fahal AH, Errington J.	PLoS Negl Trop Dis	10.1371/journal.pntd.0010128	2022
	Bacterial Hydratases Involved in Steroid Side Chain Degradation Have Distinct Substrate Specificities.	Schroeter KL, Abraham N, Rolfe N, Barnshaw R, Diamond J, Seah SYK.	J Bacteriol	10.1128/jb.00236-22	2022
Phylogeny	Numerical phenetic classification of clinically significant aerobic sporoactinomycetes and related organisms.	Trujillo ME, Goodfellow M.	Antonie Van Leeuwenhoek	10.1023/a:1024401004258	2003
	The Accuracy of Histopathological and Cytopathological Techniques in the Identification of the Mycetoma Causative Agents.	Siddig EE, Mhmoud NA, Bakhiet SM, Bakhiet SM, Abdallah OB, Mekki SO, El Dawi NI, Van de Sande W, Fahal AH.	PLoS Negl Trop Dis	10.1371/journal.pntd.0007056	2019
	Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction.	Omori WP, Pinheiro DG, Kishi LT, Fernandes CC, Fernandes GC, Gomes-Pepe ES, Pavani CD, Lemos EGM, Souza JAM.	Genet Mol Biol	10.1590/1678-4685-gmb-2017-0376	2019
	Global burden of human mycetoma: a systematic review and meta-analysis.	van de Sande WW.	PLoS Negl Trop Dis	10.1371/journal.pntd.0002550	2013
Pathogenicity	Polyphasic taxonomic study of clinically significant actinomadurae including the description of Actinomadura latina sp.nov.	Trujillo ME, Goodfellow M	Zentralbl Bakteriol	10.1016/s0934-8840(97)80029-1	1997
Phylogeny	Actinomadura bangladeshensis sp. nov. and Actinomadura chokoriensis sp. nov.	Ara I, Matsumoto A, Bakir MA, Kudo T, Omura S, Takahashi Y.	Int J Syst Evol Microbiol	10.1099/ijs.0.65533-0	2008

References

#10999	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43382
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#58070	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48293
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura latina (DSM 43382, ATCC BAA-277, JCM 10674)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001552195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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