Sporosarcina quadrami (DSM 112361, Sa2YVA2)

Name: Sporosarcina quadrami (DSM 112361, Sa2YVA2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169784

Type strain

Strain Designation Sa2YVA2

Culture col. no. DSM 112361 Sa2YVA2

NCBI tax ID(s) 2762234

Special Collections DSMZ DZIF

Links

Sporosarcina quadrami Sa2YVA2 is a mesophilic prokaryote that was isolated from chicken faeces.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 407026

NCTC-14703,DSM 112361

@ref 20215

Last LPSN update 2025-12-16 10:10:40

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Sporosarcina

Species Sporosarcina quadrami

Full scientific name Sporosarcina quadrami Pallen 2024

Synonyms (1)

"Sporosarcina quadrami"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
69211	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (MERCK 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
69211	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
69211	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
69211	chicken faeces	Norwich	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1483661v1 assembly for Sporosarcina quadrami Sa2YVA2	contig	GCA_014836615	2762234.3	8002843957	2762234	65.34

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporosarcina quadrami Sa2YVA2
NCBI: GCA_014836615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	78.80	no
125439	motility	BacteriaNetⓘ	yes	58.40	no
125439	gram_stain	BacteriaNetⓘ	positive	74.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	72.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporosarcina quadrami Sa2YVA2
NCBI: GCA_014836615.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	72.68	no
125438	anaerobic	anaerobicⓘ	no	89.16	no
125438	aerobic	aerobicⓘ	yes	81.39	no
125438	spore-forming	spore-formingⓘ	yes	77.51	no
125438	thermophilic	thermophileⓘ	no	89.47	yes
125438	flagellated	motile2+ⓘ	yes	78.13	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Valid publication of names for bacterial species from the chicken gut.	Pallen MJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006445	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69211	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112361
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporosarcina quadrami (DSM 112361, Sa2YVA2)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014836615

Genome-based predictions

Predictions

Literature

Literature

References

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