Name: Pseudodesulfovibrio sediminis SF6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 169740

Type strain:

Species: Pseudodesulfovibrio sediminis

Strain Designation: SF6

Culture col. no.: DSM 111931, NBRC 114895

Strain history: <- A. Takahashi, Hokkaido University, Sapporo, Japan; SF6 {2020}

SI-ID 400994

DSM 111931

Section

Pseudodesulfovibrio sediminis SF6 is a mesophilic bacterium that was isolated from brackish sediment.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Pseudodesulfovibrio*
	Species	**Pseudodesulfovibrio sediminis**
	Full Scientific Name (LPSN)	Pseudodesulfovibrio sediminis Takahashi et al. 2022

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69159]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #69159]

Culture medium growth

[Ref.: #69159]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69159]			growth	28 °C

[Ref.: #69159]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69159]	Sample type/isolated from	brackish sediment
[Ref.: #69159]	Geographic location (country and/or sea, region)	Lake Akkeshi
[Ref.: #69159]	Country	Japan
[Ref.: #69159]	Country ISO 3 Code	JPN
[Ref.: #69159]	Continent	Asia
[Ref.: #69159]	Geographic location	43.0455°/144.8880°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #69159]	Pseudodesulfovibrio sediminis SF6 DNA, complete genome	AP024485	3764150	ENA	2810563 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudodesulfovibrio sediminis SF6	GCA_020886695	complete	GenBank	2810563 tax ID	*

[Ref.: #69159]

GC-content

54 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudodesulfovibrio sediminis SF6 NCBI: GCA_020886695.1
[Ref.: #69480]	flagellated	yes	68.951	no
[Ref.: #69480]	gram-positive	no	99.281	no
[Ref.: #69480]	anaerobic	yes	97.099	no
[Ref.: #69480]	aerobic	no	96.891	no
[Ref.: #69480]	halophile	no	65.208	no
[Ref.: #69480]	spore-forming	no	93.854	no
[Ref.: #69480]	motile	yes	92.488	no
[Ref.: #69480]	thermophile	no	95.236	yes
[Ref.: #69480]	glucose-util	no	59.505	no
[Ref.: #69480]	glucose-ferment	no	80.79	no

Availability in culture collections External links

[Ref.: #69159]

Culture collection no.

DSM 111931, NBRC 114895

[Ref.: #115908]

SI-ID 400994

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudodesulfovibrio sediminis sp. nov., a mesophilic and neutrophilic sulfate-reducing bacterium isolated from sediment of a brackish lake.	Takahashi A, Kojima H, Watanabe M, Fukui M	Arch Microbiol	10.1007/s00203-022-02870-5	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69159

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111931

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115908

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400994.1 )

* These data were automatically processed and therefore are not curated

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