Mycoplasma marinum (DSM 105487, PE, CIP 111404)

Name: Mycoplasma marinum (DSM 105487, PE, CIP 111404)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169697

Type strain

Strain Designation PE

Culture col. no. DSM 105487 PE CIP 111404

NCBI tax ID(s) 1937190

Special Collections CIP DSMZ

Links

Mycoplasma marinum PE is a mesophilic prokaryote that was isolated from Octopus .

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407182

DSM 105487,CIP 111404

@ref 20215

Last LPSN update 2025-12-16 10:10:38

Domain Bacillati

Phylum Mycoplasmatota

Class Mollicutes

Order Mycoplasmatales

Family Mycoplasmataceae

Genus Mycoplasma

Species Mycoplasma marinum

Full scientific name Mycoplasma marinum Ramírez et al. 2020

Morphology

Cell morphology

@ref	Motility	Confidence
125438		93.805
125439		98.6

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
69064	SP4-Z MEDIUM (DSMZ Medium 1076b)	Medium recipe at MediaDive	Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Distilled water Fetal bovine serum Swine serum
115955	CIP Medium ML10	Medium recipe at CIP
115955	CIP Medium 72	Medium recipe at CIP
115955	CIP Medium A7	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
69064	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.9
125438		94.63

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
69064	Octopus (Octopus vulgaris)	Gran Canaria	Spain	ESP	Europe	27.9586	-15.5925 27.9586/-15.5925
115955	Animal, Esophagus, Octopus vulgaris	Las Palmas , Canary Islands	Spain	ESP	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
115955	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM433597v1 assembly for Mycoplasma marinum PE	contig	GCA_004335975	1937190.3	2984484267	1937190	49.91

Genome browser: GCA_004335975

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
69064	Mycoplasma sp. PE partial 16S rRNA gene, strain PE	LT716014	1525		1937190

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycoplasma marinum PE
NCBI: GCA_004335975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.90	no
125439	motility	BacteriaNetⓘ	no	63.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycoplasma marinum PE
NCBI: GCA_004335975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.63	no
125438	anaerobic	anaerobicⓘ	no	85.57	no
125438	aerobic	aerobicⓘ	no	88.40	no
125438	spore-forming	spore-formingⓘ	no	94.63	no
125438	thermophilic	thermophileⓘ	no	97.49	yes
125438	flagellated	motile2+ⓘ	no	93.81	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	First description of two moderately halophilic and psychrotolerant Mycoplasma species isolated from cephalopods and proposal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov.	Ramirez AS, Vega-Orellana OM, Viver T, Poveda JB, Rosales RS, Poveda CG, Spergser J, Szostak MP, Caballero MJ, Ressel L, Bradbury JM, Mar Tavio M, Karthikeyan S, Amann R, Konstantinidis KT, Rossello-Mora R	Syst Appl Microbiol	10.1016/j.syapm.2019.04.003	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69064	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105487
#115955	Collection of Institut Pasteur ; Curators of the CIP; CIP 111404
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycoplasma marinum (DSM 105487, PE, CIP 111404)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004335975

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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