Fundidesulfovibrio magnetotacticus (DSM 110007, FSS-1, JCM 32405)

Name: Fundidesulfovibrio magnetotacticus (DSM 110007, FSS-1, JCM 32405)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169694

Type strain

Strain Designation FSS-1

Culture col. no. DSM 110007 FSS-1 JCM 32405

NCBI tax ID(s) 2730080

Special Collections JCM DSMZ

Links

Fundidesulfovibrio magnetotacticus FSS-1 is a mesophilic prokaryote that was isolated from freshwater sediment.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 405877

JCM 32405,DSM 110007

@ref 20215

Last LPSN update 2025-12-16 10:10:38

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Fundidesulfovibrio

Species Fundidesulfovibrio magnetotacticus

Full scientific name Fundidesulfovibrio magnetotacticus Shimoshige et al. 2022

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
69059	SOLIDESULFOVIBRIO MEDIUM (DSMZ Medium 896)		Medium recipe at MediaDive	Name: SOLIDESULFOVIBRIO MEDIUM (DSMZ Medium 896) Composition: Na2-fumarate 0.575968 g/l Na-pyruvate 0.436941 g/l KH2PO4 0.19861 g/l NH4Cl 0.0595829 g/l L-Cysteine HCl x H2O 0.0496524 g/l MgSO4 x 7 H2O 0.0119166 g/l Nitrilotriacetic acid 0.00595829 g/l FeCl3 x 6 H2O 0.00536246 g/l NaCl 0.00397219 g/l (-)-Quinic acid 0.00377358 g/l MnSO4 x H2O 0.0019861 g/l CoSO4 x 7 H2O 0.000714995 g/l ZnSO4 x 7 H2O 0.000714995 g/l CaCl2 x 2 H2O 0.000397219 g/l FeSO4 x 7 H2O 0.000397219 g/l NiCl2 x 6 H2O 0.000119166 g/l Pyridoxine hydrochloride 9.93049e-05 g/l AlK(SO4)2 x 12 H2O 7.94439e-05 g/l (DL)-alpha-Lipoic acid 4.96524e-05 g/l p-Aminobenzoic acid 4.96524e-05 g/l Calcium D-(+)-pantothenate 4.96524e-05 g/l Nicotinic acid 4.96524e-05 g/l Riboflavin 4.96524e-05 g/l Thiamine HCl 4.96524e-05 g/l CuSO4 x 5 H2O 3.97219e-05 g/l H3BO3 3.97219e-05 g/l Na2MoO4 x 2 H2O 3.97219e-05 g/l Folic acid 1.9861e-05 g/l Biotin 1.9861e-05 g/l Na2WO4 x 2 H2O 1.58888e-06 g/l Na2SeO3 x 5 H2O 1.19166e-06 g/l Vitamin B12 9.93049e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
69059	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.3

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
69059	freshwater sediment	Saitama, Hidaka, Suwa pond	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1301910v1 assembly for Fundidesulfovibrio magnetotacticus FSS-1	contig	GCA_013019105	2730080.3	2915737767	2730080	66.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
69059	Desulfovibrio sp. gene for 16S rRNA, partial sequence, strain: FSS-1	LC311577	1514		885

GC content

@ref	GC-content (mol%)	Method
69059	67.5	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fundidesulfovibrio magnetotacticus FSS-1
NCBI: GCA_013019105

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.60	no
125439	motility	BacteriaNetⓘ	no	52.70	no
125439	gram_stain	BacteriaNetⓘ	positive	73.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fundidesulfovibrio magnetotacticus FSS-1
NCBI: GCA_013019105.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	87.53	no
125438	anaerobic	anaerobicⓘ	yes	82.91	no
125438	aerobic	aerobicⓘ	no	86.31	no
125438	spore-forming	spore-formingⓘ	no	82.49	no
125438	thermophilic	thermophileⓘ	no	82.89	no
125438	flagellated	motile2+ⓘ	yes	71.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fundidesulfovibrio magnetotacticus sp. nov., a sulphate-reducing magnetotactic bacterium, isolated from sediments and freshwater of a pond.	Shimoshige H, Kobayashi H, Shimamura S, Miyazaki M, Maekawa T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005516	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69059	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110007
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Fundidesulfovibrio magnetotacticus (DSM 110007, FSS-1, JCM 32405)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_013019105

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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