"Culturomica massiliensis" DSM 103121 is a mesophilic prokaryote that was isolated from Stool sample from patient.
mesophilic genome sequence 16S sequence| @ref 20215 |
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Last LPSN update
2025-12-16 10:10:38 |
| Domain Pseudomonadati |
| Phylum Bacteroidota |
| Class Bacteroidia |
| Order Bacteroidales |
| Family Porphyromonadaceae |
| Genus "Culturomica" |
| Species "Culturomica massiliensis" |
| Full scientific name Culturomica massiliensis Ndongo et al. 2016 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 69055 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | Medium recipe at MediaDive  | Name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 69055 | positive | growth | 37 | mesophilic |
| @ref | Description | Assembly level | INSDC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | PRJEB14541 assembly for Culturomica massiliensis Marseille-P2698 | scaffold | GCA_900091655   | 2786546901  | 1841857 | 75.26 |  |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Odoribacter sp. Marseille-P2698 partial 16S rRNA gene, strain Marseille-P2698 | LT558805 | 1492 | | 1841857 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Microbiome variation at the clam-sediment interface may explain changes in local productivity of Chamelea gallina in the North Adriatic sea. | Trapella G, Cinti N, Parma L, De Marco A, Dell'Acqua AN, Turroni S, Rampelli S, Scicchitano D, Iuffrida L, Bonaldo A, Franzellitti S, Candela M, Palladino G. | BMC Microbiol | 10.1186/s12866-023-03146-8 | 2023 | |
| Assessing the gut microbiota composition in older adults: connections to physical activity and healthy ageing. | Ramos C, Magistro D, Walton GE, Whitham A, Camp N, Poveda C, Gibson GR, Hough J, Kinnear W, Hunter K. | Geroscience | 10.1007/s11357-025-01605-w | 2025 | | |
| Exploring the Relevance between Gut Microbiota-Metabolites Profile and Chronic Kidney Disease with Distinct Pathogenic Factor. | Chen TH, Cheng CY, Huang CK, Ho YH, Lin JC. | Microbiol Spectr | 10.1128/spectrum.02805-22 | 2023 | | |
| Pathogenicity | Phenotyping of Fecal Microbiota of Winnie, a Rodent Model of Spontaneous Chronic Colitis, Reveals Specific Metabolic, Genotoxic, and Pro-inflammatory Properties. | Tala A, Guerra F, Resta SC, Calcagnile M, Barca A, Tredici SM, De Donno MD, Vacca M, Liso M, Chieppa M, De Angelis M, Verri T, Bozzetti MG, Bucci C, Alifano P. | Inflammation | 10.1007/s10753-022-01706-0 | 2022 | |
| Novel high-docosahexaenoic-acid tuna oil supplementation modulates gut microbiota and alleviates obesity in high-fat diet mice. | Zhang J, Yi C, Han J, Ming T, Zhou J, Lu C, Li Y, Su X. | Food Sci Nutr | 10.1002/fsn3.1941 | 2020 | | |
| An Antibiotic-Impacted Microbiota Compromises the Development of Colonic Regulatory T Cells and Predisposes to Dysregulated Immune Responses. | Zhang X, Borbet TC, Fallegger A, Wipperman MF, Blaser MJ, Muller A. | mBio | 10.1128/mbio.03335-20 | 2021 | | |
| Pathogenicity | Metformin Strongly Affects Gut Microbiome Composition in High-Fat Diet-Induced Type 2 Diabetes Mouse Model of Both Sexes. | Silamikele L, Silamikelis I, Ustinova M, Kalnina Z, Elbere I, Petrovska R, Kalnina I, Klovins J. | Front Endocrinol (Lausanne) | 10.3389/fendo.2021.626359 | 2021 | |
| 'Culturomica massiliensis', a new bacterium isolated from the human gut. | Ndongo S, Lagier JC, Fournier PE, Raoult D, Khelaifia S | New Microbes New Infect | 10.1016/j.nmni.2016.06.010 | 2016 | | |
| Taxonogenomics of Culturomica massiliensis gen. nov., sp. nov., and Emergencia timonensis gen. nov., sp. nov. new bacteria isolated from human stool microbiota. | Hamame A, Magdy Wasfy R, Lo CI, Fenollar F, Raoult D, Fournier PE, Houhamdi L. | Sci Rep | 10.1038/s41598-023-35443-7 | 2023 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive169692.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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