Odoribacter lunatus (DSM 112344, WM6_filt_col_13, CLA-AA-M09)

Name: Odoribacter lunatus (DSM 112344, WM6_filt_col_13, CLA-AA-M09)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169466

Type strain

Strain Designation WM6_filt_col_13, CLA-AA-M09

Culture col. no. DSM 112344 WM6_filt_col_13 CLA-AA-M09

NCBI tax ID(s) 2941335

Special Collections Mouse-Microbiome 2 DSMZ DZIF

Links

Odoribacter lunatus WM6_filt_col_13 is a mesophilic prokaryote that was isolated from gut content; wild mouse.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 398458

JCM:36505,DSM 112344

@ref 20215

Last LPSN update 2025-12-16 10:10:35

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Odoribacteraceae

Genus Odoribacter

Species Odoribacter lunatus

Full scientific name Odoribacter lunatus Afrizal et al. 2024

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	90.167

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68749	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
68749	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	91.496
125439	anaerobe	97.4

Spore formation

@ref	Spore formation	Confidence
125439		96.9
125438		90.996

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
68749	gut content; wild mouse	Aachen	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Odoribacter_sp_nov_DSM112344 assembly for Odoribacter lunatus DSM 112344	contig	GCA_943193135	2941335.3	8045737813	2941335	50.95

Genome browser: GCA_943193135

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Odoribacter lunatus DSM 112344
NCBI: GCA_943193135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.90	no
125439	motility	BacteriaNetⓘ	no	73.90	no
125439	gram_stain	BacteriaNetⓘ	negative	87.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Odoribacter sp. DSM 112344 Odoribacter_sp_nov_DSM112344
NCBI: GCA_943193135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	90.17	no
125438	anaerobic	anaerobicⓘ	yes	91.50	no
125438	spore-forming	spore-formingⓘ	no	91.00	no
125438	aerobic	aerobicⓘ	no	94.87	no
125438	thermophilic	thermophileⓘ	no	91.29	yes
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Title	Authors	Journal	DOI	Year
Validation List no. 216. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006229	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68749	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112344
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Odoribacter lunatus (DSM 112344, WM6_filt_col_13, CLA-AA-M09)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_943193135

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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