Bacillus rhizoplanae (DSM 111827, LMG 32091, CIP 111899)

Name: Bacillus rhizoplanae (DSM 111827, LMG 32091, CIP 111899)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169326

Type strain

Strain Designation JJ-63

Culture col. no. DSM 111827 LMG 32091 CIP 111899 JJ-63 CCM 9090

NCBI tax ID(s) 2880966

Special Collections CIP DSMZ

Links

Bacillus rhizoplanae JJ-63 is a mesophilic prokaryote that was isolated from root surface, Zea mays.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 402600

LMG 32091,CIP111899,DSM 111827

@ref 20215

Last LPSN update 2025-12-16 10:10:33

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus rhizoplanae

Full scientific name Bacillus rhizoplanae Kämpfer et al. 2022

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68584	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
68584	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.5

Spore formation

@ref	Spore formation	Confidence
125438		90.204

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
68584	root surface, Zea mays	Dunbar, Nebraska	USA	USA	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID	Score
66792	Bacillus sp. JJ-63 strain CIP111899	contig	2880966.4	2880966	62
66792	Bacillus sp. JJ-63 strain CIP111899	contig	2880966.3	2880966	62
66792	JJ-63 assembly for Bacillus rhizoplanae CIP 111899	scaffold	2880966.10	2880966	61.08

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus rhizoplanae CIP 111899
NCBI: GCA_917563915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.50	no
125439	motility	BacteriaNetⓘ	yes	74.80	no
125439	gram_stain	BacteriaNetⓘ	variable	71.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus rhizoplanae CIP 111899
NCBI: GCA_917563915.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.44	no
125438	anaerobic	anaerobicⓘ	no	92.88	no
125438	aerobic	aerobicⓘ	yes	55.49	no
125438	spore-forming	spore-formingⓘ	yes	90.20	no
125438	thermophilic	thermophileⓘ	no	92.59	yes
125438	flagellated	motile2+ⓘ	no	56.29	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus rhizoplanae sp. nov. from maize roots.	Kampfer P, Lipski A, McInroy JA, Clermont D, Criscuolo A, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.005450	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68584	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111827
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacillus rhizoplanae (DSM 111827, LMG 32091, CIP 111899)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome-based predictions

Predictions

Literature

Literature

References

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