Tenacibaculum sp. (DSM 29659, MAR_2010_89)

Name: Tenacibaculum sp. (DSM 29659, MAR_2010_89)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169246

Type strain

Strain Designation MAR_2010_89

Culture col. no. DSM 29659 MAR_2010_89

NCBI tax ID(s) 1906242

Special Collections DSMZ

Links

MAR_2010_89 is a psychrophilic prokaryote that was isolated from sediment porewater.

psychrophilic genome sequence

Name and taxonomic classification

SI-ID 397645

DSM 29659

@ref 20215

Last LPSN update 2025-12-16 10:10:32

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Tenacibaculum

Full scientific name Tenacibaculum Suzuki et al. 2001

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	98.981
125438		92

Multimedia

@ref:	68491
multimedia content:	DSM_29659.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_29659.jpg
caption:	DSM 29659, scale bar represents 5 µm
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68491	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
68491	positive	growth	20	psychrophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
68491	sediment porewater	Sylt	Germany	DEU	Europe	55.0336	8.3853 55.0336/8.3853

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2634166900 annotated assembly for Tenacibaculum sp. MAR_2010_89 Mar_2010_89	contig	GCA_900105985	1250198.4	2634166900	1250198	74.79

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tenacibaculum sp. MAR_2010_89
PATRIC: 1250198.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	82.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	motility	BacteriaNetⓘ	yes	64.50	no
125439	spore_formation	BacteriaNetⓘ	no	88.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tenacibaculum sp. MAR_2010_89
PATRIC: 1250198.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	no
125438	anaerobic	anaerobicⓘ	no	96.17	no
125438	spore-forming	spore-formingⓘ	no	88.40	no
125438	aerobic	aerobicⓘ	yes	87.78	no
125438	thermophilic	thermophileⓘ	no	95.47	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68491	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29659
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us