Name: Alteriqipengyuania abyssalis NZ-12b
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169245

Type strain:

Species: Alteriqipengyuania abyssalis

Strain Designation: NZ-12b

Culture col. no.: DSM 112810, NCCB 100841, JCM 36304

Strain history: <- J. Wink, HZI, Braunschweig, Germany; NZ-12b {2021} <- S. Tareen, HZI, Braunschweig, Germany; {2021}

NCBI tax ID(s): 2860200 (species)

SI-ID 403788

DSM 112810

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Alteriqipengyuania abyssalis NZ-12b is a mesophilic bacterium that was isolated from Crateromorpha positioned in between volcanic rocks, large.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Alteriqipengyuania*
	Species	**Alteriqipengyuania abyssalis**
	Full Scientific Name (LPSN)	Alteriqipengyuania abyssalis Tareen et al. 2022

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %96.802
[Ref.: #125439]	Gram stain	negative Confidence in %98.9

Multimedia content

[Ref.: #68490]

Caption:

DSM 112810, scale bar represents 2 µm

[Ref.: #68490]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68490]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #68490]

Culture medium growth

[Ref.: #68490]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68490]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %99.4

[Ref.: #125439]

Ability of spore formation

no Confidence in %97.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68490]	Sample type/isolated from	Crateromorpha (sponge species) positioned in between volcanic (andesitic) rocks, large
[Ref.: #68490]	Geographic location (country and/or sea, region)	pacific ocean, depth of 1165 m below the ocean surface at the southern Kermadec ridge
[Ref.: #68490]	Country	New Zealand
[Ref.: #68490]	Country ISO 3 Code	NZL
[Ref.: #68490]	Continent	Australia and Oceania
[Ref.: #68490]	Geographic location	35.6090°/178.8540°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alteriqipengyuania abyssalis NZ-12B	GCA_019857185	contig	GenBank ENA	2860200 tax ID	*

[Ref.: #68490]

GC-content

65.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alteriqipengyuania abyssalis NZ-12B NCBI: GCA_019857185.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	96.802	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	91.096	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	83.983	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.634	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.027	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	60.615	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alteriqipengyuania abyssalis NZ-12B NCBI: GCA_019857185
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	50.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.4

Availability in culture collections External links

[Ref.: #68490]

Culture collection no.

DSM 112810, NCCB 100841, JCM 36304

[Ref.: #115487]

SI-ID 403788

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68490

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112810

#115487

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403788.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Alteriqipengyuania abyssalis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Alteriqipengyuania abyssalis NZ-12B

Alteriqipengyuania abyssalis NZ-12B

Change proposal

Change proposal