Name: Actinocorallia cavernae N3-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16914

Type strain:

Species: Actinocorallia cavernae

Strain Designation: N3-7

Culture col. no.: DSM 45040, JCM 13278, NRRL B-24429, BCRC 16845, CIP 109251, NBRC 106142, NCIMB 14302

Strain history: S. D. Lee N3-7.

NCBI tax ID(s): 328075 (species)

SI-ID 290954

JCM 13278, NRRL B-24429, DSM 45040, CIP 109251, BCRC 16845, CCRC 16845

Section

Actinocorallia cavernae N3-7 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil inside a natural cave.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinocorallia*
	Species	**Actinocorallia cavernae**
	Full Scientific Name (LPSN)	Actinocorallia cavernae Lee 2006

Information on morphological and physiological properties Morphology

[Ref.: #31611]	Gram stain	positive

[Ref.: #31611]	Cell shape	rod-shaped

[Ref.: #31611]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12267]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12267]

Culture medium growth

[Ref.: #12267]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12267]

Culture medium composition

expand / minimize

[Ref.: #12267]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #12267]

Culture medium growth

[Ref.: #12267]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #12267]	growth	28 °C
[Ref.: #31611]	growth	25-30 °C
[Ref.: #31611]	optimum	25-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12267]	Temperature range	mesophilic
[Ref.: #31611]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31611]			growth	5.1-10.1
[Ref.: #31611]		no	growth	4.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31611]

Oxygen tolerance

aerobe

[Ref.: #31611]

Ability of spore formation

yes

[Ref.: #31611]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31611]	arabinose ChEBI	+	carbon source
[Ref.: #31611]	cellobiose ChEBI	+	carbon source
[Ref.: #31611]	esculin ChEBI	+	hydrolysis
[Ref.: #31611]	fructose ChEBI	+	carbon source
[Ref.: #31611]	galactose ChEBI	+	carbon source
[Ref.: #31611]	glucose ChEBI	+	carbon source
[Ref.: #31611]	lactose ChEBI	+	carbon source
[Ref.: #31611]	maltose ChEBI	+	carbon source
[Ref.: #31611]	mannose ChEBI	+	carbon source
[Ref.: #31611]	rhamnose ChEBI	+	carbon source
[Ref.: #31611]	ribose ChEBI	+	carbon source
[Ref.: #31611]	salicin ChEBI	+	carbon source
[Ref.: #31611]	sucrose ChEBI	+	carbon source
[Ref.: #31611]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12267]	Sample type/isolated from	soil inside a natural cave
[Ref.: #12267]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #12267]	Country	Republic of Korea
[Ref.: #12267]	Country ISO 3 Code	KOR
[Ref.: #12267]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a natural cave
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY966427 (>99% sequence identity) for Actinocorallia cavernae subclade from Microbeatlas

Aquatic Samples	16
Soil Samples	704
Animal Samples	52
Plant Samples	110
Total Samples	882

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12267]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12267]	Actinocorallia cavernae strain N3-7 16S ribosomal RNA gene, partial sequence	AY966427	1407	ENA	328075 tax ID

[Ref.: #12267]	GC-content	70.1 mol%
[Ref.: #67770]	GC-content	70.1 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #12267]

Culture collection no.

DSM 45040, JCM 13278, NRRL B-24429, BCRC 16845, CIP 109251, NBRC 106142, NCIMB 14302

[Ref.: #85919]

SI-ID 290954

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinocorallia cavernae sp. nov., isolated from a natural cave in Jeju, Korea.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.63895-0	2006	*

References

#12267

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45040

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31611

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27899 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85919

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290954.1 )

#27899

IJSEM 1085 2006 ( DOI 10.1099/ijs.0.63895-0 , PubMed 16627659 )

* These data were automatically processed and therefore are not curated

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