Name: Actinocorallia glomerata I-226
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16912

Type strain:

Species: Actinocorallia glomerata

Strain Designation: I-226

Culture col. no.: DSM 44360, IFO 15960, JCM 9376, NBRC 15960, IMSNU 22179

Strain history: T. Itoh I-226.

NCBI tax ID(s): 46203 (species)

SI-ID 50589

DSM 44360, IFO 15960, JCM 9376, NBRC 15960

Section

Actinocorallia glomerata I-226 is a mesophilic bacterium that builds an aerial mycelium and was isolated from decayed leaf of a deciduous tree from a pond.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinocorallia*
	Species	**Actinocorallia glomerata**
	Full Scientific Name (LPSN)	Actinocorallia glomerata (Itoh et al. 1996) Zhang et al. 2001

Synonym

Actinomadura glomerata

Information on morphological and physiological properties Morphology

[Ref.: #19653]	Incubation period	10-14 days
[Ref.: #19653]	Cultivation medium used	ISP 2

[Ref.: #19653]	Incubation period	10-14 days
[Ref.: #19653]	Cultivation medium used	ISP 3

[Ref.: #19653]	Incubation period	10-14 days
[Ref.: #19653]	Cultivation medium used	ISP 4

[Ref.: #19653]	Incubation period	10-14 days
[Ref.: #19653]	Cultivation medium used	ISP 5

[Ref.: #19653]	Incubation period	10-14 days
[Ref.: #19653]	Cultivation medium used	ISP 6

[Ref.: #19653]	Incubation period	10-14 days
[Ref.: #19653]	Cultivation medium used	ISP 7

[Ref.: #19653]	Multicellular complex forming ability	yes
[Ref.: #19653]	Multicellular complex name	Aerial Mycelium
[Ref.: #19653]	Multicellular complex color	Oyster white
[Ref.: #19653]	Medium Name (multicellularity)	ISP 2

[Ref.: #19653]	Multicellular complex forming ability	yes
[Ref.: #19653]	Multicellular complex name	Aerial Mycelium
[Ref.: #19653]	Multicellular complex color	Oyster white
[Ref.: #19653]	Medium Name (multicellularity)	ISP 3

[Ref.: #19653]	Multicellular complex forming ability	no
[Ref.: #19653]	Medium Name (multicellularity)	ISP 4

[Ref.: #19653]	Multicellular complex forming ability	no
[Ref.: #19653]	Medium Name (multicellularity)	ISP 5

[Ref.: #19653]	Multicellular complex forming ability	no
[Ref.: #19653]	Medium Name (multicellularity)	ISP 6

[Ref.: #19653]	Multicellular complex forming ability	no
[Ref.: #19653]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11703]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #11703]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #11703]

Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11703]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #11703]

Culture medium composition

expand / minimize

[Ref.: #19653]

Culture medium

ISP 2

[Ref.: #19653]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

[Ref.: #19653]

Culture medium growth

[Ref.: #19653]

Culture medium composition

expand / minimize

[Ref.: #19653]

Culture medium

ISP 4

[Ref.: #19653]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19653]

Culture medium

ISP 5

[Ref.: #19653]

Culture medium growth

[Ref.: #19653]

Culture medium composition

expand / minimize

[Ref.: #19653]

Culture medium

ISP 6

[Ref.: #19653]

Culture medium growth

[Ref.: #19653]

Culture medium composition

expand / minimize

[Ref.: #19653]

Culture medium

ISP 7

[Ref.: #19653]

Culture medium growth

[Ref.: #19653]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11703]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #11703]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19653]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₄), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19653]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19653]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19653]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19653]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19653]	mannitol ChEBI	+
[Ref.: #19653]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19653]	raffinose ChEBI	+
[Ref.: #19653]	rhamnose ChEBI	+
[Ref.: #19653]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19653]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19653]	484	-	-	-	-	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19653]	479	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11703]	Sample type/isolated from	decayed leaf of a deciduous tree from a pond
[Ref.: #11703]	Geographic location (country and/or sea, region)	Saitamo
[Ref.: #11703]	Country	Japan
[Ref.: #11703]	Country ISO 3 Code	JPN
[Ref.: #11703]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Decayed leaf of deciduous tree
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF134068 (>99% sequence identity) for Actinocorallia glomerata from Microbeatlas

Aquatic Samples	3
Soil Samples	132
Animal Samples	3
Plant Samples	83
Total Samples	221

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11703]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19653]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinomadura glomerata partial 16S rRNA gene, strain IMSNU 22179T	AJ293704	1509	ENA	46203 tax ID	*
[Ref.: #20218]	Actinomadura glomerata 16S ribosomal RNA gene, partial sequence	AF134068	1454	ENA	46203 tax ID	*
[Ref.: #20218]	Actinomadura glomerata 16S-23S ribosomal RNA intergenic spacer region, partial sequence	AF134098	381	ENA	46203 tax ID	*
[Ref.: #20218]	Actinocorallia glomerata gene for 16S rRNA, partial sequence	D50660	1350	ENA	46203 tax ID	*
[Ref.: #20218]	Actinocorallia glomerata gene for 16S rRNA, partial sequence, strain: NBRC 15960	AB364591	1464	ENA	46203 tax ID	*

[Ref.: #11703]	GC-content	71.7 mol%
[Ref.: #67770]	GC-content	70.9 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #11703]

Culture collection no.

DSM 44360, IFO 15960, JCM 9376, NBRC 15960, IMSNU 22179

[Ref.: #85917]

SI-ID 50589

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinocorallia lasiicapitis sp. nov., an actinomycete isolated from the head of an ant (Lasius fuliginosus L.).	Liu C, Li Y, Ye L, Zhao J, Piao C, Li Z, Li J, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001005	2016	*

References

#11703

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44360

#19653

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85917

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50589.1 )

* These data were automatically processed and therefore are not curated

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