Actinocorallia libanotica 828-21 is a bacterium that builds an aerial mycelium and was isolated from soil, ruins.
genome sequence 16S sequence Bacteria
SI-ID 41168
| @ref 20215 |
Last LPSN update
2026-05-29 08:28:53 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Streptosporangiales |
| Family Thermomonosporaceae |
| Genus Actinocorallia |
| Species Actinocorallia libanotica |
| Full scientific name Actinocorallia libanotica (Meyer 1981) Zhang et al. 2001 |
| Synonyms (1) |
| BacDive ID | Other strains from Actinocorallia libanotica (4) | Type strain |
|---|---|---|
| 16909 | A. libanotica 828-46, DSM 43556, IMET 9571 | |
| 16910 | A. libanotica 828-51, A 191, DSM 46189, IFO 14096, IMET ... | |
| 100261 | A. libanotica STI09615(IMET), 828-20, | |
| 100262 | A. libanotica STI09617(IMET), 828-43, |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11141 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | Medium recipe at MediaDive  | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water | ||
| 19575 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19575 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19575 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19575 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19575 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19575 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 11141 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | facultative anaerobe | 97.009 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 95.664 |
| 67770 | Observationquinones: MK-9(H6), MK-9(H4), MK-9(H4), MK-9(H4), MK-9(H6), MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 19575 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 19575 | 62968 ChEBI | cellulose | + | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 19575 | 28757 ChEBI | fructose | - | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 19575 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 19575 | 29864 ChEBI | mannitol | - | ||
| 19575 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 19575 | 16634 ChEBI | raffinose | + | ||
| 19575 | 26546 ChEBI | rhamnose | + | ||
| 19575 | 17992 ChEBI | sucrose | + | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 19575 | 18222 ChEBI | xylose | + |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
Global distribution of 16S sequence U49007 (>99% sequence identity) for Actinocorallia from Microbeatlas 
 Aquatic Samples |
19 |
 Soil Samples |
238 |
 Animal Samples |
29 |
 Plant Samples |
45 |
| Total Samples | 331 |
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | ASM3952517v1 assembly for Actinocorallia libanotica JCM 10696 | scaffold | GCA_039525175   | 46162 | 36.46 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Actinomadura libanotica 16S-23S ribosomal RNA intergenic spacer region, partial sequence | AF134100 | 385 | | 46162 | |
| 20218 | Actinomadura libanotica 16S rRNA gene | U49007 | 1404 |  | 46162 | |
| 20218 | Actinocorallia libanotica gene for 16S rRNA, partial sequence, strain: NBRC 14095 | AB364592 | 1463 | | 46162 | |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 66.2 | thermal denaturation, midpoint method (Tm) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Identification of coxsackievirus A24 variant during an acute hemorrhagic conjunctivitis outbreak in coastal Kenya, 2024. | Lambisia AW, Mwita Morobe J, Moraa E, Mwarumba S, K N Korir F, Seif Athman R, Kiptui R, Mbee M, Mugo N, Amoth P, Muange P, J Houldcroft C, Barasa E, Mwangangi J, Githinji G, C Holmes E, Isabella Ochola-Oyier L, N Agoti C. | Wellcome Open Res | 10.12688/wellcomeopenres.23522.2 | 2025 | | |
| Diversity of Actinobacteria Isolated from Date Palms Rhizosphere and Saline Environments: Isolation, Identification and Biological Activity Evaluation. | Messaoudi O, Wink J, Bendahou M. | Microorganisms | 10.3390/microorganisms8121853 | 2020 | | |
| Colon Microbiocenosis and Its Correction in Patients Receiving Programmed Hemodialysis. | Belova IV, Khrulev AE, Tochilina AG, Khruleva NS, Lobanova NA, Zhirnov VA, Molodtsova SB, Lobanov VN, Solovieva IV. | Sovrem Tekhnologii Med | 10.17691/stm2020.12.5.07 | 2021 | | |
| Phylogeny | Clarification of the relationship between the members of the family Thermomonosporaceae on the basis of 16S rDNA, 16S-23S rRNA internal transcribed spacer and 23S rDNA sequences and chemotaxonomic analyses. | Zhang Z, Kudo T, Nakajima Y, Wang Y. | Int J Syst Evol Microbiol | 10.1099/00207713-51-2-373 | 2001 | |
| Phylogeny | Actinocorallia populi sp. nov., an endophytic actinomycete isolated from a root of Populus adenopoda (Maxim.). | Li X, Wang Z, Lu F, Zhang H, Tian J, He L, Chu Y, Tian Y. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002840 | 2018 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive16908.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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