Name: Thermodesulfobium narugense Na82
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16898

Type strain:

Species: Thermodesulfobium narugense

Strain Designation: Na82

Culture col. no.: DSM 14796, JCM 11510, NBRC 100082

Strain history: K. Mori Na82.

NCBI tax ID(s): 747365 (strain), 184064 (species)

SI-ID 130853

DSM 14796, JCM 11510, NBRC 100082

Section

Thermodesulfobium narugense Na82 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from narugo hot spring.

Gram-negative
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermodesulfobiaceae*
	Genus	*Thermodesulfobium*
	Species	**Thermodesulfobium narugense**
	Full Scientific Name (LPSN)	Thermodesulfobium narugense Mori et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.762

[Ref.: #5549]

Incubation period

3-7 days

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5549]

Culture medium

THERMODESULFOBIUM MEDIUM (DSMZ Medium 1005)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5549]			growth	50 °C
[Ref.: #67770]			growth	50 °C

[Ref.: #5549]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5549]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.209

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.952

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Observation

quinones: MK-7(H₂), MK-7, MK-7(H₄), MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5549]	Sample type/isolated from	narugo hot spring
[Ref.: #5549]	Geographic location (country and/or sea, region)	Miyagi prefecture, near Katanuma Lake
[Ref.: #5549]	Country	Japan
[Ref.: #5549]	Country ISO 3 Code	JPN
[Ref.: #5549]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Microbial mat at Narugo hot spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Miyagi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

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Global distribution of 16S sequence AB077817 (>99% sequence identity) for Thermodesulfobium narugense from Microbeatlas

Aquatic Samples	64
Soil Samples	9
Animal Samples	34
Plant Samples	8
Total Samples	115

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5549]	Thermodesulfobium narugense gene for 16S rRNA, partial sequence	AB077817	1363	ENA	747365 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermodesulfobium narugense DSM 14796	GCA_000212395	complete	GenBank	747365 tax ID	*
[Ref.: #66792]	Thermodesulfobium narugense DSM 14796	747365.3	complete	PATRIC	747365 tax ID	*
[Ref.: #66792]	Thermodesulfobium narugense Na82, DSM 14796	2504756006	complete	JGI IMG/M	747365 tax ID	*

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GC-content

35.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermodesulfobium narugense DSM 14796 DSM 14796 NCBI: GCA_000212395.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermodesulfobium narugense DSM 14796 DSM 14796 NCBI: GCA_000212395.1
[Ref.: #69480]	motile	yes	83.744	no
[Ref.: #69480]	flagellated	no	91.183	no
[Ref.: #69480]	gram-positive	no	97.819	no
[Ref.: #69480]	anaerobic	yes	99.322	yes
[Ref.: #69480]	aerobic	no	98.381	yes
[Ref.: #69480]	halophile	no	93.918	no
[Ref.: #69480]	spore-forming	no	93.758	no
[Ref.: #69480]	thermophile	yes	99.622	yes
[Ref.: #69480]	glucose-util	no	68.624	no
[Ref.: #69480]	glucose-ferment	no	72.892	no

Availability in culture collections External links

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Culture collection no.

DSM 14796, JCM 11510, NBRC 100082

[Ref.: #85904]

SI-ID 130853

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A novel lineage of sulfate-reducing microorganisms: Thermodesulfobiaceae fam. nov., Thermodesulfobium narugense, gen. nov., sp. nov., a new thermophilic isolate from a hot spring.	Mori K, Kim H, Kakegawa T, Hanada S	Extremophiles	10.1007/s00792-003-0320-0	2003	*

References

#5549

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14796

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85904

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID130853.1 )

* These data were automatically processed and therefore are not curated

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Thermodesulfobium narugense DSM 14796 DSM 14796

Thermodesulfobium narugense DSM 14796 DSM 14796

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