Mycoplasmopsis columbina (ATCC 29257, MMP 1, NCTC 10178)

Name: Mycoplasmopsis columbina (ATCC 29257, MMP 1, NCTC 10178)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168975

Type strain

Strain Designation MMP 1

Culture col. no. ATCC 29257 MMP 1 NCTC 10178

NCBI tax ID(s) 1408457 114881

Links

Mycoplasmopsis columbina MMP 1 is a bacterium of the family Metamycoplasmataceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 39440

ATCC 29257,NCTC 10178

@ref 20215

Last LPSN update 2026-05-29 08:46:30

Domain Bacteria

Phylum Mycoplasmatota

Class Mollicutes

Order Mycoplasmoidales

Family Metamycoplasmataceae

Genus Mycoplasmopsis

Species Mycoplasmopsis columbina

Full scientific name Mycoplasmopsis columbina (Shimizu et al. 1978) Gupta et al. 2019

Synonyms (1)

Mycoplasma columbinum

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	negative	99.75
125438		95.888

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	98.074

Spore formation

@ref	Spore formation	Confidence
125439		99.944
125438		96.432

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AF221113 (>99% sequence identity) for Mycoplasma columbinum subclade from Microbeatlas

Aquatic Samples	0
Soil Samples	1
Animal Samples	10
Plant Samples	0
Total Samples	11

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20215	1	Risk group

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	57572_G01-3 assembly for Mycoplasmopsis columbina NCTC10178	complete	GCA_900660685	114881.3	2851291046	114881	82.91
66792	ASM71217v1 assembly for Mycoplasmopsis columbina ATCC 29257	scaffold	GCA_000712175	1408457.3	2565956533	1408457	75.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Mycoplasma columbinum isolate MMP-1(T) 16S ribosomal RNA gene, partial sequence	AF221113	1457		114881
124043	Mycoplasma columbinum 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY729928	960		114881

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 57572_G01-3 assembly for Mycoplasmopsis columbina NCTC10178
BV-BRC: 114881.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.94	no
125439	motility	BacteriaNetⓘ	yes	43.47	no
125439	gram_stain	BacteriaNetⓘ	negative	99.75	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.07	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycoplasmopsis columbina NCTC10178
NCBI: GCA_900660685.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.38	no
125438	anaerobic	anaerobicⓘ	no	86.51	no
125438	aerobic	aerobicⓘ	no	83.30	no
125438	spore-forming	spore-formingⓘ	no	96.43	no
125438	thermophilic	thermophileⓘ	no	93.77	no
125438	flagellated	motile2+ⓘ	no	95.89	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us