Baekduia soli (KCTC 22257, BR7-21, LMG 24797)

Name: Baekduia soli (KCTC 22257, BR7-21, LMG 24797)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168954

Type strain

Strain Designation BR7-21

Culture col. no. KCTC 22257 BR7-21 LMG 24797 DSM 110830

NCBI tax ID(s) 496014

Special Collections KCTC DSMZ

Links

Baekduia soli BR7-21 is a mesophilic prokaryote that was isolated from ginseng field, soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399179

LMG 24797,DSM 110830

@ref 20215

Last LPSN update 2025-12-16 10:10:28

Domain Bacillati

Phylum Actinomycetota

Class Thermoleophilia

Order Solirubrobacterales

Family Baekduiaceae

Genus Baekduia

Species Baekduia soli

Full scientific name Baekduia soli An et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
69045	HALF STRENGTH R2A (DSMZ Medium 1492)		Medium recipe at MediaDive	Name: HALF STRENGTH R2A (DSMZ Medium 1492) Composition: Agar 15.0 g/l Casamino acids 0.25 g/l Na-pyruvate 0.25 g/l Starch 0.25 g/l Glucose 0.25 g/l Proteose peptone 0.25 g/l Yeast extract 0.25 g/l K2HPO4 0.15 g/l MgSO4 x 7 H2O 0.025 g/l Distilled water
69045	1/10 R2A MEDIUM MODIFIED (+ YEAST EXTRACT) (DSMZ Medium 1365a)		Medium recipe at MediaDive	Name: 1/10 R2A MEDIUM MODIFIED (+ YEAST EXTRACT) (DSMZ Medium 1365a) Composition: Agar 15.0 g/l Yeast extract 0.25 g/l Starch 0.05 g/l Glucose 0.05 g/l Casamino acids 0.05 g/l Proteose peptone 0.05 g/l MgSO4 x 7 H2O 0.005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
69045	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
20215	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
69045	ginseng field, soil	Baekdu Mountain	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU370951 (>99% sequence identity) for Baekduia soli subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	424
Animal Samples	71
Plant Samples	111
Total Samples	629

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM797066v1 assembly for Baekduia soli BR7-21	complete	GCA_007970665	496014.3	2883391222	496014	91.39

Genome browser: GCA_007970665

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Baekduia soli strain BR7-21 16S ribosomal RNA gene, partial sequence	EU370951	1423		496014

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Baekduia soli BR7-21
NCBI: GCA_007970665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	70.20	no
125439	motility	BacteriaNetⓘ	no	62.90	no
125439	gram_stain	BacteriaNetⓘ	positive	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Baekduia soli BR7-21
NCBI: GCA_007970665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	69.21	no
125438	anaerobic	anaerobicⓘ	no	84.84	no
125438	aerobic	aerobicⓘ	yes	80.69	no
125438	spore-forming	spore-formingⓘ	no	59.82	no
125438	thermophilic	thermophileⓘ	no	88.21	yes
125438	flagellated	motile2+ⓘ	no	57.72	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Baekduia soli gen. nov., sp. nov., a novel bacterium isolated from the soil of Baekdu Mountain and proposal of a novel family name, Baekduiaceae fam. nov.	An DS, Siddiqi MZ, Kim KH, Yu HS, Im WT	J Microbiol	10.1007/s12275-018-7107-6	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69045	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110830
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Baekduia soli (KCTC 22257, BR7-21, LMG 24797)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007970665

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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