Name: Thermococcus barossii SHCK-94
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16887

Type strain:

Species: Thermococcus barossii

Strain Designation: SHCK-94

Culture col. no.: DSM 17882, ATCC BAA-1085, JCM 12858, DSM 9535

Strain history: E. V. Pikuta SHCK-94 <-- R. M. Kelly.

NCBI tax ID(s): 54077 (species)

SI-ID 131953

DSM 9535, ATCC BAA-1085, JCM 12858, DSM 17882

Section

Thermococcus barossii SHCK-94 is an anaerobe, hyperthermophilic, Gram-negative archaeon that was isolated from Rock fragments of a hydrothermal vent flange formation.

Gram-negative
anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus barossii**
	Full Scientific Name (LPSN)	Thermococcus barossii Duffaud et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.856

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7215]

Culture medium

MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)

[Ref.: #7215]

Culture medium growth

[Ref.: #7215]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7215]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7215]			growth	80 °C
[Ref.: #67770]			growth	82 °C

[Ref.: #7215]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.678

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %97.42

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7215]	Sample type/isolated from	Rock fragments of a hydrothermal vent flange formation
[Ref.: #7215]	Geographic location (country and/or sea, region)	northeast Pacific Ocean, East Pacific Rise of the Juan de Fuca Ridge

[Ref.: #67770]	Sample type/isolated from	Rock fragments of a hydrothermal vent flange formation, located along the East Pacific Rise of the Juan de Fuca Ridge
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Terrestrial	#Geologic
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7215]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7215]	Thermococcus barossii 16S ribosomal RNA gene, partial sequence	U76535	1428	ENA	54077 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermococcus barossii SHCK-94	GCA_002214465	complete	GenBank	54077 tax ID	*
[Ref.: #66792]	Thermococcus barossii SHCK-94	2758568026	complete	JGI IMG/M	54077 tax ID	*

[Ref.: #7215]	GC-content	60.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	60 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermococcus barossii SHCK-94 NCBI: GCA_002214465.1
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermococcus barossii SHCK-94 NCBI: GCA_002214465.1
[Ref.: #69480]	flagellated	no	96.283	no
[Ref.: #69480]	gram-positive	no	97.026	no
[Ref.: #69480]	anaerobic	yes	99.01	no
[Ref.: #69480]	aerobic	no	97.561	no
[Ref.: #69480]	halophile	no	76.171	no
[Ref.: #69480]	spore-forming	no	97.426	no
[Ref.: #69480]	glucose-util	yes	79.953	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	motile	no	82.276	no
[Ref.: #69480]	glucose-ferment	no	56.059	no

Availability in culture collections External links

[Ref.: #7215]

Culture collection no.

DSM 17882, ATCC BAA-1085, JCM 12858, DSM 9535

[Ref.: #85893]

SI-ID 131953

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise.	Dalmasso C, Oger P, Selva G, Courtine D, L'Haridon S, Garlaschelli A, Roussel E, Miyazaki J, Reveillaud J, Jebbar M, Takai K, Maignien L, Alain K	Syst Appl Microbiol	10.1016/j.syapm.2016.08.003	2016	*

References

#7215

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17882

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85893

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131953.1 )

* These data were automatically processed and therefore are not curated

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