Name: Thermococcus thioreducens OGL-20P
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16881

Type strain:

Species: Thermococcus thioreducens

Strain Designation: OGL-20P

Culture col. no.: DSM 14981, ATCC BAA-394, JCM 12859

Strain history: E. V. Pikuta OGL-20P.

NCBI tax ID(s): 277988 (species)

SI-ID 309513

ATCC BAA-394, DSM 14981, JCM 12859

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Thermococcus thioreducens OGL-20P is an anaerobe, hyperthermophilic archaeon that was isolated from deep-sea black smoker chimney debris in sediment mud at the Rainbow hydrothermal vent site at a depth of 2300 m.

anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus thioreducens**
	Full Scientific Name (LPSN)	Thermococcus thioreducens Pikuta et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %95.6

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5651]

Culture medium

MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)

[Ref.: #5651]

Culture medium growth

[Ref.: #5651]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5651]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5651]			growth	84 °C
[Ref.: #67770]			growth	82 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5651]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %99.9

[Ref.: #125439]

Ability of spore formation

no Confidence in %95.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5651]	Sample type/isolated from	deep-sea black smoker chimney debris in sediment mud at the Rainbow hydrothermal vent site at a depth of 2300 m
[Ref.: #5651]	Geographic location (country and/or sea, region)	Atlantic Ocean off the coast of the Azores (Mid-Atlantic Ridge 36.2° N 33.9° W)
[Ref.: #5651]	Geographic location	36.2000°/-33.9000°

[Ref.: #67770]	Sample type/isolated from	Black smoker chimney material from the Rainbow hydrothermal vent site on the Mid-Atlantic Ridge
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF394925 (>99% sequence identity) for Thermococcus from Microbeatlas

Aquatic Samples	9
Soil Samples
Animal Samples
Plant Samples
Total Samples	9

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5651]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5651]	Thermococcus thioreducens 16S ribosomal RNA gene, partial sequence; intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF394925	1885	GenBank ENA	277988 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermococcus thioreducens OGL-20P	GCA_900109425	scaffold	GenBank ENA	277988 tax ID	*
[Ref.: #66792]	Thermococcus thioreducens OGL-20P	GCA_002214545	complete	GenBank ENA	277988 tax ID	*
[Ref.: #66792]	Thermococcus thioreducens DSM 14981	GCA_001418715	contig	GenBank ENA	277988 tax ID	*
[Ref.: #66792]	Thermococcus thioreducens DSM 14981	2681813416	draft	JGI IMG/M	277988 tax ID	*
[Ref.: #66792]	Thermococcus thioreducens OGL-20P	2773858064	complete	JGI IMG/M	277988 tax ID	*
[Ref.: #66792]	Thermococcus thioreducens strain DSM 14981	277988.4	wgs	PATRIC	277988 tax ID	*

[Ref.: #5651]

GC-content

52.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermococcus thioreducens OGL-20P NCBI: GCA_002214545.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	67.734	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	85.902	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	86.717	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	86.766	no
[Ref.: #125438]	thermophile	thermophilicⓘ	yes	78.427	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	78.458	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermococcus thioreducens OGL-20P NCBI: GCA_002214545
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	73
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	95.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	99.9

Availability in culture collections External links

[Ref.: #5651]

Culture collection no.

DSM 14981, ATCC BAA-394, JCM 12859

[Ref.: #85889]

SI-ID 309513

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of sulfur-reducing archaeon Thermococcus thioreducens DSM 14981(T).	Hong SJ, Park CE, Park GS, Kim MC, Jung BK, Shin JH	Braz J Microbiol	10.1016/j.bjm.2016.04.031	2016	*
Phylogeny	Backbone 1H, 15N, and 13C resonance assignments and secondary structure of a novel protein OGL-20P(T)-358 from hyperthermophile Thermococcus thioreducens sp. nov.	Wilson R, Hughes R, Curto E, Ng J, Twigg P	Mol Cells	1152	2007	*
Phylogeny	Thermococcus thioreducens sp. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon from a deep-sea hydrothermal vent.	Pikuta EV, Marsic D, Itoh T, Bej AK, Tang J, Whitman WB, Ng JD, Garriott OK, Hoover RB	Int J Syst Evol Microbiol	10.1099/ijs.0.65057-0	2007	*

References

#5651

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14981

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85889

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309513.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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