Name: Thermococcus barophilus MP
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16869

Type strain:

Species: Thermococcus barophilus

Strain Designation: MP

Culture col. no.: DSM 11836

Strain history: <- V. T. Marteinsson; MP

NCBI tax ID(s): 391623 (strain), 55802 (species)

SI-ID 49188

DSM 11836

Section

Thermococcus barophilus MP is an anaerobe, hyperthermophilic archaeon that was isolated from chimmney wall of a deep-sea hydrothermal vent .

anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus barophilus**
	Full Scientific Name (LPSN)	Thermococcus barophilus Marteinsson et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4508]

Culture medium

MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)

[Ref.: #4508]

Culture medium growth

[Ref.: #4508]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4508]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4508]			growth	85 °C

[Ref.: #4508]

Temperature range

hyperthermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4508]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4508]	Sample type/isolated from	chimmney wall of a deep-sea hydrothermal vent (3600 m)
[Ref.: #4508]	Geographic location (country and/or sea, region)	mid-Atlantic Ridge, Snake Pit
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4508]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4508]	Thermococcus barophilus strain MP 16S ribosomal RNA gene, partial sequence	U82237	1396	ENA	55802 tax ID
[Ref.: #20218]	Thermococcus barophilus strain DSM 11836 16S ribosomal RNA gene, partial sequence	AY099172	1451	ENA	391623 tax ID	*
[Ref.: #20218]	Thermococcus barophilus strain DSM 11836 16S-23S ribosomal RNA intergenic spacer region, complete sequence	AY099208	182	ENA	391623 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermococcus barophilus MP	GCA_000151105	complete	GenBank	391623 tax ID	*
[Ref.: #66792]	Thermococcus barophilus MP, DSM 11836	650716096	complete	JGI IMG/M	391623 tax ID	*
[Ref.: #66792]	Thermococcus barophilus MP	391623.23	plasmid	PATRIC	391623 tax ID	*
[Ref.: #66792]	Thermococcus barophilus MP	391623.17	complete	PATRIC	391623 tax ID	*

[Ref.: #4508]

GC-content

37.1 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermococcus barophilus MP MP NCBI: GCA_000151105.2
[Ref.: #69480]	motile	no	84.564	no
[Ref.: #69480]	flagellated	no	97.368	no
[Ref.: #69480]	gram-positive	no	95.61	no
[Ref.: #69480]	anaerobic	yes	99.062	yes
[Ref.: #69480]	aerobic	no	97.784	yes
[Ref.: #69480]	halophile	no	77.302	no
[Ref.: #69480]	spore-forming	no	96.728	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	79.361	no
[Ref.: #69480]	glucose-ferment	no	63.973	no

Availability in culture collections External links

[Ref.: #4508]

Culture collection no.

DSM 11836

[Ref.: #85877]

SI-ID 49188

References

#4508

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11836

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85877

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49188.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thermococcus barophilus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Thermococcus barophilus MP MP

Change proposal

Change proposal