Leptospira borgpetersenii (Veldrat Bataviae 46, ATCC 43292, DSM 21538)

Name: Leptospira borgpetersenii (Veldrat Bataviae 46, ATCC 43292, DSM 21538)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168620

Type strain

Strain Designation Veldrat Bataviae 46

Culture col. no. Veldrat Bataviae 46 ATCC 43292 DSM 21538

NCBI tax ID(s) 174

Special Collections DSMZ

Links

Leptospira borgpetersenii Veldrat Bataviae 46 is a bacterium of the family Leptospiraceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 38032

ATCC 23479,ATCC 43292

@ref 20215

Last LPSN update 2026-05-29 08:46:25

Domain Bacteria

Phylum Spirochaetota

Class Spirochaetia

Order Leptospirales

Family Leptospiraceae

Genus Leptospira

Species Leptospira borgpetersenii

Full scientific name Leptospira borgpetersenii Yasuda et al. 1987

BacDive ID	Other strains from **Leptospira borgpetersenii** (52)	Type strain
171169	L. borgpetersenii LEP1143, Worsfold, CRBIP6.1143
171170	L. borgpetersenii LEP1149, LT 96-68, CRBIP6.1149
171171	L. borgpetersenii LEP1157, Hampton, CRBIP6.1157
171172	L. borgpetersenii LEP1158, Piyasena, CRBIP6.1158
171173	L. borgpetersenii LEP1160, De 10, CRBIP6.1160
171174	L. borgpetersenii LEP 1165, 80-27, CRBIP6.1165
171175	L. borgpetersenii LEP 1166, L 82, CRBIP6.1166
171176	L. borgpetersenii LEP1167, Sari, CRBIP6.1167
171177	L. borgpetersenii LEP 1175, M 84, CRBIP6.1175
171178	L. borgpetersenii Kerala, CRBIP6.1177
171179	L. borgpetersenii LEP1181, Sponselee, CRBIP6.1181
171180	L. borgpetersenii LEP1190, Mannuthi, CRBIP6.1190
171181	L. borgpetersenii LEP1208, CRBIP6.1208
171182	L. borgpetersenii LEP 1217, De 10, CRBIP6.1217
171183	L. borgpetersenii LEP1243, Castellon 3, CRBIP6.1243
171184	L. borgpetersenii LEP 1246, Mus 127, CRBIP6.1246
171185	L. borgpetersenii LEP1249, CRBIP6.1249, Veldrat Batavia 46
171186	L. borgpetersenii LEP1264, LT 96-68, CRBIP6.1264
171187	L. borgpetersenii LEP1275, 1853, CRBIP6.1275
171188	L. borgpetersenii LEP1276, Njenga, CRBIP6.1276
171189	L. borgpetersenii LEP1285, LT 90-68, CRBIP6.1285
171190	L. borgpetersenii LEP1286, Whitcomb, CRBIP6.1286
171191	L. borgpetersenii LEP1287, Whitcomb, CRBIP6.1287
171192	L. borgpetersenii LEP1294, LT 932, CRBIP6.1294
171193	L. borgpetersenii LEP1298, Kerala, CRBIP6.1298
171194	L. borgpetersenii LEP1322, Sari, CRBIP6.1322
171195	L. borgpetersenii LEP 1329, Sorex Jalna, CRBIP6.1329
171196	L. borgpetersenii LEP1330, LT 90-68, CRBIP6.1330
171197	L. borgpetersenii LEP1347, Kanana, CRBIP6.1347
171198	L. borgpetersenii LEP1365, Kanana, CRBIP6.1365
171199	L. borgpetersenii LEP1366, M 48, CRBIP6.1366
171200	L. borgpetersenii LEP 1370, Kisuba, CRBIP6.1370
171201	L. borgpetersenii LEP 1373, Bratislava, CRBIP6.1373
171202	L. borgpetersenii LEP 1378, Jules, CRBIP6.1378
171203	L. borgpetersenii LEP 1389, L 100, CRBIP6.1389
171204	L. borgpetersenii LEP 1390, L 100, CRBIP6.1390
171205	L. borgpetersenii LEP 1391, RP 29, CRBIP6.1391
171206	L. borgpetersenii LEP1399, Kibos, CRBIP6.1399
171207	L. borgpetersenii LEP 1400, 1627 Burgas (T78), CRBIP6.1400
171208	L. borgpetersenii LEP1404, CRBIP6.1404, Veldrat Batavia 46 ...
171209	L. borgpetersenii LEP 1410, Sorex Jalna, CRBIP6.1410
171210	L. borgpetersenii LEP1413, 78-082387, CRBIP6.1413
171211	L. borgpetersenii LEP1431, Kibos, CRBIP6.1431
171212	L. borgpetersenii LEP1435, Nona, CRBIP6.1435
171213	L. borgpetersenii LEP1438, Julu, CRBIP6.1438
171214	L. borgpetersenii LEP1444, Sponselee, CRBIP6.1444
171215	L. borgpetersenii LEP1446, Arborea, CRBIP6.1446
171216	L. borgpetersenii LEP1449, Piyasena, CRBIP6.1449
171217	L. borgpetersenii LEP 1452, CRBIP6.1452
171218	L. borgpetersenii LEP1469, Poi, CRBIP6.1469
171219	L. borgpetersenii LEP1470, Poi, CRBIP6.1470
171220	L. borgpetersenii LEP1486, 114-2, CRBIP6.1486

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.687
125438	negative	91.329

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.36

Spore formation

@ref	Spore formation	Confidence
125439		99.905

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AY887899 (>99% sequence identity) for Leptospira from Microbeatlas

Aquatic Samples	109
Soil Samples	25
Animal Samples	54
Plant Samples	12
Total Samples	200

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20215	2	Risk group

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM304642v1 assembly for Leptospira borgpetersenii serovar Javanica DSM 21538	contig	GCA_003046425	280504.3	2728369472	280504	55.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Leptospira borgpetersenii serovar Javanica strain Veldrat Batavia 46 16S ribosomal RNA gene, partial sequence	AY887899	1431		280504

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM304642v1 assembly for Leptospira borgpetersenii serovar Javanica DSM 21538
NCBI: GCA_003046425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.91	no
125439	motility	BacteriaNetⓘ	no	68.76	no
125439	gram_stain	BacteriaNetⓘ	negative	99.69	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.36	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leptospira borgpetersenii serovar Javanica strain DSM 21538
PATRIC: 280504.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.33	no
125438	anaerobic	anaerobicⓘ	no	81.69	no
125438	spore-forming	spore-formingⓘ	no	84.95	no
125438	aerobic	aerobicⓘ	yes	63.37	no
125438	thermophilic	thermophileⓘ	no	86.99	no
125438	flagellated	motile2+ⓘ	yes	52.48	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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