Name: Pyrococcus horikoshii JA-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16858

Type strain:

Species: Pyrococcus horikoshii

Strain Designation: JA-1

Culture col. no.: DSM 13347, JCM 9975

Strain history: C. Kato <-- F. Robb JA-1.

NCBI tax ID(s): 53953 (species)

SI-ID 49458

DSM 13347, JCM 9975

Other strains from Pyrococcus horikoshii

P. horikoshii OT-3, DSM 12428, JCM 9974, NBRC ... (type strain)

Section

Pyrococcus horikoshii JA-1 is an anaerobe, hyperthermophilic archaeon that was isolated from marine hydrothermal vent at 1395 m depth.

anaerobe
hyperthermophilic
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Pyrococcus*
	Species	**Pyrococcus horikoshii**
	Full Scientific Name (LPSN)	Pyrococcus horikoshii González et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5009]

Culture medium

PYROCOCCUS MEDIUM (DSMZ Medium 377)

[Ref.: #5009]

Culture medium growth

[Ref.: #5009]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5009]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5009]			growth	95 °C
[Ref.: #67770]			growth	95 °C

[Ref.: #5009]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5009]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5009]	Sample type/isolated from	marine hydrothermal vent at 1395 m depth
[Ref.: #5009]	Geographic location (country and/or sea, region)	Pacific Ocean, Okinawa Trough
[Ref.: #5009]	Country	Japan
[Ref.: #5009]	Country ISO 3 Code	JPN
[Ref.: #5009]	Continent	Asia
[Ref.: #5009]	Geographic location	27.5500°/126.9330°

[Ref.: #67770]	Sample type/isolated from	Hydrothermal vent at the Okinawa Trough
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5009]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pyrococcus horikoshii gene for 16S ribosomal RNA, partial sequence	D87344	1463	ENA	53953 tax ID

Availability in culture collections External links

[Ref.: #5009]

Culture collection no.

DSM 13347, JCM 9975

[Ref.: #85867]

SI-ID 49458

References

#5009

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13347

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#85867

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49458.1 )

* These data were automatically processed and therefore are not curated

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