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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
0002 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone A2 similar to 16S rRNA, mRNA sequence |
T12765 |
74 |
|
186497 tax ID |
* |
[Ref.: #20218] |
Pyrococcus furiosus gene for 16S rRNA, partial sequence, strain: JCM 8422 |
AB603518 |
1321 |
|
2261 tax ID |
* |
[Ref.: #20218] |
0009 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone D1 similar to 16S rRNA, mRNA sequence |
T12772 |
155 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0010 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone D1 similar to 16S rRNA, mRNA sequence |
T12773 |
76 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0012 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone E4 similar to 16S rRNA, mRNA sequence |
T12779 |
75 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0023 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone M4 similar to 16S rRNA, mRNA sequence |
T12785 |
206 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0024 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone M4 similar to 16S rRNA, mRNA sequence |
T12786 |
160 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0028 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone M8 similar to 16S rRNA, mRNA sequence |
T12790 |
185 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0029 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone M8 similar to 16S rRNA, mRNA sequence |
T12791 |
120 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0035 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone N7 similar to 16S rRNA, mRNA sequence |
T12797 |
190 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0036 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone N7 similar to 16S rRNA, mRNA sequence |
T12801 |
328 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0037 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone N8 similar to 16S rRNA, mRNA sequence |
T12802 |
144 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0038 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone O1 similar to 16S rRNA, mRNA sequence |
T12803 |
127 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0044 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone O5 similar to 16S rRNA, mRNA sequence |
T12808 |
146 |
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186497 tax ID |
* |
[Ref.: #20218] |
0045 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone O5 similar to 16S rRNA, mRNA sequence |
T12809 |
142 |
|
186497 tax ID |
* |
[Ref.: #20218] |
0051 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone 464 similar to 16S rRNA, mRNA sequence |
T12812 |
166 |
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186497 tax ID |
* |
[Ref.: #20218] |
0052 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone 464 similar to 16S rRNA, mRNA sequence |
T12813 |
91 |
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186497 tax ID |
* |
[Ref.: #20218] |
0053 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone 481 similar to 16S rRNA, mRNA sequence |
T12814 |
166 |
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186497 tax ID |
* |
[Ref.: #20218] |
0054 Pyrococcus furiosus, cDNA Pyrococcus furiosus DSM 3638 cDNA clone 481 similar to 16S rRNA, mRNA sequence |
T12815 |
174 |
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186497 tax ID |
* |
[Ref.: #20218] |
Pyrococcus furiosus 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic ribosomal RNA spacer, complete sequence; tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence |
L36458 |
471 |
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2261 tax ID |
* |
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Genome sequence information: |
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Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #66792] |
Pyrococcus furiosus DSM 3638 |
GCA_008245085 |
complete |
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186497 tax ID |
* |
[Ref.: #66792] |
Pyrococcus furiosus DSM 3638 |
GCA_000007305 |
complete |
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186497 tax ID |
* |
[Ref.: #66792] |
Pyrococcus furiosus DSM 3638 |
638154515 |
complete |
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186497 tax ID |
* |
[Ref.: #66792] |
Pyrococcus furiosus DSM 3638 |
186497.12 |
complete |
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186497 tax ID |
* |
[Ref.: #66792] |
Pyrococcus furiosus DSM 3638 |
186497.32 |
complete |
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186497 tax ID |
* |
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Availability in culture collections External links
[Ref.: #1428] |
Culture collection no. |
DSM 3638, ATCC 43587, JCM 8422, CGMCC 1.2516 |
[Ref.: #85863] |
SI-ID 45148
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* |
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
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Topic |
Title |
Authors |
Journal |
DOI |
Year |
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Transcriptome |
Parallel evolution of transcriptome architecture during genome reorganization. |
Yoon SH, Reiss DJ, Bare JC, Tenenbaum D, Pan M, Slagel J, Moritz RL, Lim S, Hackett M, Menon AL, Adams MW, Barnebey A, Yannone SM, Leigh JA, Baliga NS |
Genome Res |
10.1101/gr.122218.111 |
2011 |
* |
Metabolism |
Expression and Characterization of a Novel Glycerophosphodiester Phosphodiesterase from Pyrococcus furiosus DSM 3638 That Possesses Lysophospholipase D Activity. |
Wang F, Lai L, Liu Y, Yang B, Wang Y |
Int J Mol Sci |
10.3390/ijms17060831 |
2016 |
* |
Phenotype |
A mutant ('lab strain') of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology. |
Lewis DL, Notey JS, Chandrayan SK, Loder AJ, Lipscomb GL, Adams MW, Kelly RM |
Extremophiles |
10.1007/s00792-014-0712-3 |
2014 |
* |
Metabolism |
Crystal structure and nucleic acid-binding activity of the CRISPR-associated protein Csx1 of Pyrococcus furiosus. |
Kim YK, Kim YG, Oh BH |
Proteins |
10.1002/prot.24183 |
2012 |
* |
Enzymology |
Mutation studies in the active site of beta-glycosidase from Pyrococcus furiosus DSM 3638. |
Park S, Alli I, Park K, Oh B, Lee B |
Protein Pept Lett |
PPL-EPUB-20120712-3 |
2013 |
* |
Enzymology |
Comparative analysis of the catalytic components in the archaeal dye-linked L-proline dehydrogenase complexes. |
Kawakami R, Noguchi C, Higashi M, Sakuraba H, Ohshima T |
Appl Microbiol Biotechnol |
10.1007/s00253-012-4201-2 |
2012 |
* |
Genetics |
Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638. |
Gao J, Wang J |
Curr Microbiol |
10.1007/s00284-011-0035-x |
2011 |
* |
Enzymology |
Expression and characterization of an extremely thermostable beta-glycosidase (mannosidase) from the hyperthermophilic archaeon Pyrococcus furiosus DSM3638. |
Park SH, Park KH, Oh BC, Alli I, Lee BH |
N Biotechnol |
10.1016/j.nbt.2011.05.002 |
2011 |
* |
Enzymology |
Phosphomannose isomerase/GDP-mannose pyrophosphorylase from Pyrococcus furiosus: a thermostable biocatalyst for the synthesis of guanidinediphosphate-activated and mannose-containing sugar nucleotides. |
Mizanur RM, Pohl NL |
Org Biomol Chem |
10.1039/b822794b |
2009 |
* |
Phylogeny |
The crystal structure of a virus-like particle from the hyperthermophilic archaeon Pyrococcus furiosus provides insight into the evolution of viruses. |
Akita F, Chong KT, Tanaka H, Yamashita E, Miyazaki N, Nakaishi Y, Suzuki M, Namba K, Ono Y, Tsukihara T, Nakagawa A |
J Mol Biol |
10.1016/j.jmb.2007.02.075 |
2007 |
* |
Metabolism |
Mechanistic aspects and redox properties of hyperthermophilic L-proline dehydrogenase from Pyrococcus furiosus related to dimethylglycine dehydrogenase/oxidase. |
Monaghan PJ, Leys D, Scrutton NS |
FEBS J |
10.1111/j.1742-4658.2007.05750.x |
2007 |
* |
Enzymology |
Characterization of a thermostable cyclodextrin glucanotransferase from Pyrococcus furiosus DSM3638. |
Lee MH, Yang SJ, Kim JW, Lee HS, Kim JW, Park KH |
Extremophiles |
10.1007/s00792-007-0061-6 |
2007 |
* |
Enzymology |
Crystallization and preliminary X-ray diffraction analysis of a flavoenzyme amine dehydrogenase/oxidase from Pyrococcus furiosus DSM 3638. |
Monaghan PJ, Leys D, Scrutton NS |
Acta Crystallogr Sect F Struct Biol Cryst Commun |
10.1107/S1744309105020737 |
2005 |
* |
Enzymology |
Unusually broad substrate tolerance of a heat-stable archaeal sugar nucleotidyltransferase for the synthesis of sugar nucleotides. |
Mizanur RM, Zea CJ, Pohl NL |
J Am Chem Soc |
10.1021/ja046070d |
2004 |
* |
Enzymology |
Cloning and sequencing of a gene from the archaeon Pyrococcus furiosus with high homology to a gene encoding phosphoenolpyruvate synthetase from Escherichia coli. |
Jones CE, Fleming TM, Piper PW, Littlechild JA, Cowan DA |
Gene |
10.1016/0378-1119(95)00128-s |
1995 |
* |
Phylogeny |
Growth requirements of hyperthermophilic sulfur-dependent heterotrophic archaea isolated from a shallow submarine geothermal system with reference to their essential amino acids. |
Hoaki T, Nishijima M, Kato M, Adachi K, Mizobuchi S, Hanzawa N, Maruyama T |
Appl Environ Microbiol |
10.1128/aem.60.8.2898-2904.1994 |
1994 |
* |
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Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription. |
Grunberger F, Reichelt R, Bunk B, Sproer C, Overmann J, Rachel R, Grohmann D, Hausner W |
Front Microbiol |
10.3389/fmicb.2019.01603 |
2019 |
* |
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Dissecting the Repertoire of DNA-Binding Transcription Factors of the Archaeon Pyrococcus furiosus DSM 3638. |
Denis A, Martinez-Nunez MA, Tenorio-Salgado S, Perez-Rueda E |
Life (Basel) |
10.3390/life8040040 |
2018 |
* |
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An In Silico Approach for Characterization of an Aminoglycoside Antibiotic-Resistant Methyltransferase Protein from Pyrococcus furiosus (DSM 3638). |
Oany AR, Jyoti TP, Ahmad SA |
Bioinform Biol Insights |
10.4137/BBI.S14620 |
2014 |
* |
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- References
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#1428 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 3638
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#66794 |
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#85863 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID45148.1 )
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- * These data were automatically processed and therefore are not curated
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