Agromyces protaetiae (KACC 19308, FW100M-8, NBRC 113048)

Name: Agromyces protaetiae (KACC 19308, FW100M-8, NBRC 113048)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168515

Type strain

Strain Designation FW100M-8

Culture col. no. KACC 19308 FW100M-8 NBRC 113048

NCBI tax ID(s) 2509455

Special Collections Literature strains

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Agromyces protaetiae FW100M-8 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from gut sample of larva of Protaetia brevitarsis seulensis which was kept at the National Institute of Agricultural Sciences, Wanju-gun, South Korea.

Gram-positive rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132004

NBRC 113048

@ref 20215

Last LPSN update 2026-05-29 08:46:23

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Agromyces

Species Agromyces protaetiae

Full scientific name Agromyces protaetiae Heo et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Confidence
69583	positive	0.4-0.6 µm	rod-shaped
125438	positive			92.148
125438				94.5
125439	positive			96.988

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
69583	1 mm	whitish yellow	circular	3 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
69583	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
69583	positive	growth	15-35
69583	positive	optimum	28

Culture pH

@ref	Ability	Type	PH
69583	positive	optimum	8
69583	positive	growth	7.0-9.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
69583	aerobe
69583	microaerophile
125439	obligate aerobe	96.086

Spore formation

69583

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69583	NaCl	positive	growth	0-3.0 %(w/v)
69583	NaCl	positive	optimum	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69583	16808 ChEBI	2-dehydro-D-gluconate	-	assimilation
69583	16193 ChEBI	3-hydroxybenzoate	-	assimilation
69583	37054 ChEBI	3-hydroxybutyrate	-	assimilation
69583	17879 ChEBI	4-hydroxybenzoate	-	assimilation
69583	58143 ChEBI	5-dehydro-D-gluconate	-	assimilation
69583	17128 ChEBI	adipate	-	assimilation
69583	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
69583		casein	-	hydrolysis
69583	17634 ChEBI	D-glucose	+	assimilation
69583	16899 ChEBI	D-mannitol	-	assimilation
69583	16024 ChEBI	D-mannose	+	assimilation
69583	16988 ChEBI	D-ribose	-	assimilation
69583	17924 ChEBI	D-sorbitol	-	assimilation
69583	16991 ChEBI	dna	-	hydrolysis
69583	4853 ChEBI	esculin	+	hydrolysis
69583	5291 ChEBI	gelatin	-	hydrolysis
69583	17234 ChEBI	glucose	-	fermentation
69583	28087 ChEBI	glycogen	+	assimilation
69583	17120 ChEBI	hexanoate	-	assimilation
69583	17368 ChEBI	hypoxanthine	-	hydrolysis
69583	35581 ChEBI	indole	-
69583	17240 ChEBI	itaconate	-	assimilation
69583	16977 ChEBI	L-alanine	-	assimilation
69583	30849 ChEBI	L-arabinose	-	assimilation
69583	18287 ChEBI	L-fucose	+	assimilation
69583	15971 ChEBI	L-histidine	-	assimilation
69583	17203 ChEBI	L-proline	-	assimilation
69583	62345 ChEBI	L-rhamnose	-	assimilation
69583	17115 ChEBI	L-serine	-	assimilation
69583	24996 ChEBI	lactate	-	assimilation
69583	25115 ChEBI	malate	-	assimilation
69583	17306 ChEBI	maltose	+	assimilation
69583	28053 ChEBI	melibiose	-	assimilation
69583	17268 ChEBI	myo-inositol	-	assimilation
69583	506227 ChEBI	N-acetylglucosamine	-	assimilation
69583	17632 ChEBI	nitrate	-	reduction
69583	18401 ChEBI	phenylacetate	-	assimilation
69583	32032 ChEBI	potassium gluconate	-	assimilation
69583	17272 ChEBI	propionate	-	assimilation
69583	17814 ChEBI	salicin	-	assimilation
69583	32954 ChEBI	sodium acetate	-	assimilation
69583	53258 ChEBI	sodium citrate	-	assimilation
69583	62983 ChEBI	sodium malonate	-	assimilation
69583	28017 ChEBI	starch	+	hydrolysis
69583	9300 ChEBI	suberic acid	-	assimilation
69583	17992 ChEBI	sucrose	+	assimilation
69583	53426 ChEBI	tween 80	-	hydrolysis
69583	18186 ChEBI	tyrosine	-	hydrolysis
69583	16199 ChEBI	urea	-	hydrolysis
69583	31011 ChEBI	valerate	-	assimilation
69583	15318 ChEBI	xanthine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69583	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
69583	acid phosphatase	-	3.1.3.2
69583	alkaline phosphatase	-	3.1.3.1
69583	alpha-chymotrypsin	-	3.4.21.1
69583	alpha-fucosidase	-	3.2.1.51
69583	alpha-galactosidase	-	3.2.1.22
69583	alpha-glucosidase	+	3.2.1.20
69583	alpha-mannosidase	-	3.2.1.24
69583	arginine dihydrolase	-	3.5.3.6
69583	beta-galactosidase	-	3.2.1.23
69583	beta-glucosidase	+	3.2.1.21
69583	beta-glucuronidase	-	3.2.1.31
69583	catalase	-	1.11.1.6
69583	cystine arylamidase	+	3.4.11.3
69583	cytochrome oxidase	-	1.9.3.1
69583	esterase (C 4)	+
69583	esterase Lipase (C 8)	+
69583	leucine arylamidase	+	3.4.11.1
69583	lipase (C 14)	-
69583	N-acetyl-beta-glucosaminidase	+	3.2.1.52
69583	naphthol-AS-BI-phosphohydrolase	+
69583	trypsin	-	3.4.21.4
69583	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

69583

Fatty acid	Percentage
C15:0 anteiso	33.6
C17:0 anteiso	26.1
C16:0 iso	26
C15:0 iso	5.3
C16:0	3.6
C17:0 iso	3
C14:0 iso	1
C14:0 2OH	0.8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
69583	gut sample of larva of Protaetia brevitarsis seulensis which was kept at the National Institute of Agricultural Sciences, Wanju-gun, South Korea	Wanju-gun	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM413540v1 assembly for Agromyces protaetiae FW100M-8	complete	GCA_004135405	2509455.3	2841168549	2509455	86.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Agromyces protaetiae strain FW100M-8 16S ribosomal RNA gene, partial sequence	MK490987	1527		2509455

GC content

@ref	GC-content (mol%)	Method
69583	70.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM413540v1 assembly for Agromyces protaetiae FW100M-8
NCBI: GCA_004135405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	77.56	no
125439	gram_stain	BacteriaNetⓘ	positive	96.99	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.09	no
125439	spore_formation	BacteriaNetⓘ	no	87.36	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Agromyces protaetiae FW100M-8
NCBI: GCA_004135405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.15	no
125438	anaerobic	anaerobicⓘ	no	95.41	yes
125438	aerobic	aerobicⓘ	yes	84.12	no
125438	spore-forming	spore-formingⓘ	no	73.80	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis.	Heo J, Hamada M, Tamura T, Saito S, Lee SD, Kim JS, Hong SB, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003908	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69583	Jun Heo, Moriyuki Hamada, Tomohiko Tamura, Satomi Saito, Soon Dong Lee, Jeong-Seon Kim, Seung-Beom Hong, Soon-Wo Kwon and Soo-Jin Kim: Agromyces protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003908 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Agromyces protaetiae (KACC 19308, FW100M-8, NBRC 113048)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004135405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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