Saccharopolyspora karakumensis (5K548, JCM 33530, CGMCC 4.7625)

Name: Saccharopolyspora karakumensis (5K548, JCM 33530, CGMCC 4.7625)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168466

Type strain

Strain Designation 5K548

Culture col. no. 5K548 JCM 33530 CGMCC 4.7625

NCBI tax ID(s) 2530386

Special Collections JCM

Links

Saccharopolyspora karakumensis 5K548 is a bacterium of the family Pseudonocardiaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131929

JCM 33530

@ref 20215

Last LPSN update 2026-05-29 08:46:23

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora karakumensis

Full scientific name Saccharopolyspora karakumensis Saygin et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	91.86
125438	positive	90.607

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.031

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM434922v1 assembly for Saccharopolyspora karakumensis 5K548	contig	GCA_004349225	2530386.3	2866857481	2530386	51.03

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Saccharopolyspora karakumensis strain 5K548 16S ribosomal RNA gene, partial sequence	MG770750	1486		2530386

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM434922v1 assembly for Saccharopolyspora karakumensis 5K548
NCBI: GCA_004349225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	77.24	no
125439	gram_stain	BacteriaNetⓘ	positive	91.86	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.03	no
125439	spore_formation	BacteriaNetⓘ	no	81.04	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharopolyspora karakumensis 5K548
NCBI: GCA_004349225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.61	no
125438	anaerobic	anaerobicⓘ	no	95.18	no
125438	aerobic	aerobicⓘ	yes	89.09	no
125438	spore-forming	spore-formingⓘ	yes	85.78	no
125438	thermophilic	thermophileⓘ	no	94.82	no
125438	flagellated	motile2+ⓘ	no	85.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora karakumensis sp. nov., Saccharopolyspora elongata sp. nov., Saccharopolyspora aridisoli sp. nov., Saccharopolyspora terrae sp. nov. and their biotechnological potential revealed by genome analysis.	Saygin H, Ay H, Guven K, Inan-Bektas K, Cetin D, Sahin N	Syst Appl Microbiol	10.1016/j.syapm.2021.126270	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora karakumensis (5K548, JCM 33530, CGMCC 4.7625)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004349225

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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