Name: Nioella nitratireducens SSW136
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 168333

Type strain:

Species: Nioella nitratireducens

Strain Designation: SSW136

Culture col. no.: KCTC 32417, NCIM 5499

NCBI tax ID(s): 1287720 (species)

Section

Nioella nitratireducens SSW136 is a bacterium of the family Roseobacteraceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Nioella*
	Species	**Nioella nitratireducens**
	Full Scientific Name (LPSN)	Nioella nitratireducens Rajasabapathy et al. 2015

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence KC534331 (>99% sequence identity) for Nioella nitratireducens subclade from Microbeatlas

Aquatic Samples	116
Soil Samples	1
Animal Samples	4
Plant Samples
Total Samples	121

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20215]

Biosafety level

Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Nioella nitratireducens strain SSW136 16S ribosomal RNA gene, partial sequence	KC534331	1411	ENA	1287720 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nioella nitratireducens SSW136	GCA_001879715	contig	GenBank	1287720 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nioella nitratireducens SSW136 NCBI: GCA_001879715.1
[Ref.: #69480]	flagellated	no	95.689	no
[Ref.: #69480]	gram-positive	no	98.378	no
[Ref.: #69480]	anaerobic	no	96.252	no
[Ref.: #69480]	aerobic	yes	78.116	no
[Ref.: #69480]	halophile	yes	60.464	no
[Ref.: #69480]	spore-forming	no	96.159	no
[Ref.: #69480]	thermophile	no	95.231	no
[Ref.: #69480]	glucose-util	yes	71.732	no
[Ref.: #69480]	motile	no	90.842	no
[Ref.: #69480]	glucose-ferment	no	92.429	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

KCTC 32417, NCIM 5499

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Harenicola maris gen. nov., sp. nov. isolated from the Sea of Japan shallow sediments.	Romanenko LA, Kurilenko VV, Chernysheva NY, Tekutyeva LA, Velansky PV, Svetashev VI, Isaeva MP	Arch Microbiol	10.1007/s00203-021-02360-0	2021	*
Phylogeny	Nioella ostreopsis sp. nov., isolated from toxic dinoflagellate, Ostreopsis lenticularis.	Yang Q, Jiang Z, Zhou X, Zhang R, Wu Y, Lou L, Ma Z, Wang D, Ge Y, Zhang X, Yu X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003816	2020	*
Phylogeny	Rhodophyticola porphyridii gen. nov., sp. nov., isolated from a red alga, Porphyridium marinum.	Jung HS, Jeong SE, Chun BH, Quan ZX, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.003371	2019	*
Phylogeny	Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat.	Cha IT, Cho ES, Park JM, Yeh JY, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002442	2017	*
Phylogeny	Nioella sediminis sp. nov., isolated from surface sediment and emended description of the genus Nioella.	Liu Y, Du J, Lai Q, Dong C, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001798	2017	*
Phylogeny	Nioella nitratireducens gen. nov., sp. nov., a novel member of the family Rhodobacteraceae isolated from Azorean Island.	Rajasabapathy R, Mohandass C, Yoon JH, Dastager SG, Liu Q, Khieu TN, Son CK, Li WJ, Colaco A	Antonie Van Leeuwenhoek	10.1007/s10482-014-0355-5	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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