Name: Prevotella lacticifex R5019
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 168324

Type strain:

Species: Prevotella lacticifex

Strain Designation: R5019

Culture col. no.: JCM 34664, DSM 112675

Strain history: <- T. Shinkai, NARO, Toshigi, Japan; R5019

NCBI tax ID(s): 2854755 (species)

SI-ID 398303

DSM 112675

Prevotella lacticifex R5019 is a mesophilic bacterium of the family Prevotellaceae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella lacticifex**
	Full Scientific Name (LPSN)	Prevotella lacticifex Shinkai et al. 2022

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68611]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #68611]

Culture medium growth

[Ref.: #68611]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68611]			growth	37 °C

[Ref.: #68611]

Temperature range

mesophilic

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Prevotella lacticifex R5019 gene for 16S ribosomal RNA, partial sequence	LC639954	1492	ENA	2854755 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prevotella lacticifex JCM 34664, DSM 112675	GCA_019973375	scaffold	GenBank	2854755 tax ID	*
[Ref.: #66792]	Prevotella sp. R5019 strain JCM 34664, DSM 112675	2854755.6	wgs	PATRIC	2854755 tax ID	*
[Ref.: #66792]	Prevotella sp. R5019 strain JCM 34664, DSM 112675	2854755.4	wgs	PATRIC	2854755 tax ID	*
[Ref.: #66792]	Prevotella sp. R5019 strain JCM 34664, DSM 112675	2854755.3	wgs	PATRIC	2854755 tax ID	*
[Ref.: #66792]	Prevotella sp. R5019 strain JCM 34664, DSM 112675	2854755.5	wgs	PATRIC	2854755 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella lacticifex JCM 34664, DSM 112675 NCBI: GCA_019973375.1
[Ref.: #69480]	flagellated	no	96.927	no
[Ref.: #69480]	gram-positive	no	96.403	no
[Ref.: #69480]	anaerobic	yes	98.958	no
[Ref.: #69480]	aerobic	no	98.499	no
[Ref.: #69480]	halophile	no	89.558	no
[Ref.: #69480]	spore-forming	no	96.174	no
[Ref.: #69480]	motile	no	92.838	no
[Ref.: #69480]	thermophile	no	90.759	yes
[Ref.: #69480]	glucose-util	yes	87.605	no
[Ref.: #69480]	glucose-ferment	yes	72.516	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

JCM 34664, DSM 112675

[Ref.: #115149]

SI-ID 398303

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella lacticifex sp. nov., isolated from the rumen of cows.	Shinkai T, Ikeyama N, Kumagai M, Ohmori H, Sakamoto M, Ohkuma M, Mitsumori M	Int J Syst Evol Microbiol	10.1099/ijsem.0.005278	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68611

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112675

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115149

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398303.1 )

* These data were automatically processed and therefore are not curated

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Prevotella lacticifex JCM 34664, DSM 112675

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