Name: Clostridium thailandense PL3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 168263

Type strain:

Species: Clostridium thailandense

Strain Designation: PL3

Culture col. no.: TISTR 2984, DSM 111812, TISTR 2948

Strain history: <- N. K. Birkeland, University of Bergen, Department of Biology, Bergen, Norway; PL3 <- S Chaikitkaew

NCBI tax ID(s): 2794346 (species)

SI-ID 402416

DSM 111812

Section

Clostridium thailandense PL3 is a mesophilic bacterium that was isolated from peatland soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium thailandense**
	Full Scientific Name (LPSN)	Clostridium thailandense Chaikitkaew et al. 2022

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69193]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #69193]

Culture medium growth

[Ref.: #69193]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69193]			growth	30 °C

[Ref.: #69193]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69193]	Sample type/isolated from	peatland soil
[Ref.: #69193]	Geographic location (country and/or sea, region)	Nakhon Si Tammarat, Kuan Kreng peat swamp
[Ref.: #69193]	Country	Thailand
[Ref.: #69193]	Country ISO 3 Code	THA
[Ref.: #69193]	Continent	Asia
[Ref.: #69193]	Geographic location	8.0700°/100.0330°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Clostridium thailandense strain PL3 16S ribosomal RNA gene, partial sequence	MW330006	1294	ENA	2794346 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium thailandense PL3	GCA_019207025	contig	GenBank	2794346 tax ID	*

[Ref.: #69193]

GC-content

31.1 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium thailandense PL3 NCBI: GCA_019207025.1
[Ref.: #69480]	flagellated	yes	50.908	no
[Ref.: #69480]	gram-positive	yes	54.574	no
[Ref.: #69480]	anaerobic	yes	98.708	no
[Ref.: #69480]	aerobic	no	98.254	no
[Ref.: #69480]	halophile	no	96.688	no
[Ref.: #69480]	spore-forming	yes	96.193	no
[Ref.: #69480]	motile	yes	82.789	no
[Ref.: #69480]	thermophile	no	99.08	yes
[Ref.: #69480]	glucose-util	yes	90.529	no
[Ref.: #69480]	glucose-ferment	yes	64.843	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

TISTR 2984, DSM 111812, TISTR 2948

[Ref.: #115135]

SI-ID 402416

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium thailandense sp. nov., a novel CO2-reducing acetogenic bacterium isolated from peatland soil.	Chaikitkaew S, In-Chan S, Singkhala A, Tukanghan W, Mamimin C, Reungsang A, Birkeland NK, O-Thong S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005254	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69193

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111812

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115135

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402416.1 )

* These data were automatically processed and therefore are not curated

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