Diplocloster agilis (VKM B-3497, JCM 34353, ASD5720)

Name: Diplocloster agilis (VKM B-3497, JCM 34353, ASD5720)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168259

Type strain

Strain Designation ASD5720

Culture col. no. VKM B-3497 JCM 34353 ASD5720

NCBI tax ID(s) 2850323

Special Collections JCM

Links

Diplocloster agilis ASD5720 is a bacterium of the family Lachnospiraceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132485

JCM 34353

@ref 20215

Last LPSN update 2026-05-29 08:46:20

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Diplocloster

Species Diplocloster agilis

Full scientific name Diplocloster agilis Chaplin et al. 2022

Synonyms (1)

Suonthocola fibrivorans

BacDive ID	Other strains from **Diplocloster agilis** (1)	Type strain
159085	D. agilis Sanger_33, DSM 102154, JCM 34981

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	96.698

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence MT908949 (>99% sequence identity) for Lachnospiraceae from Microbeatlas

Aquatic Samples	33
Soil Samples	12
Animal Samples	3578
Plant Samples	2
Total Samples	3625

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1904227v1 assembly for Diplocloster agilis ASD5720	scaffold	GCA_019042275	2850323.3	8071543621	2850323	50.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Diplocloster agilis strain ASD5720 16S ribosomal RNA gene, partial sequence	MT908949	1530		2850323

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1904227v1 assembly for Diplocloster agilis ASD5720
NCBI: GCA_019042275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	yes	72.86	no
125439	gram_stain	BacteriaNetⓘ	variable	71.86	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.70	no
125439	spore_formation	BacteriaNetⓘ	yes	74.29	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Diplocloster agilis ASD5720
NCBI: GCA_019042275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.56	no
125438	anaerobic	anaerobicⓘ	yes	81.88	no
125438	aerobic	aerobicⓘ	no	89.90	no
125438	spore-forming	spore-formingⓘ	yes	63.46	no
125438	thermophilic	thermophileⓘ	no	91.06	no
125438	flagellated	motile2+ⓘ	yes	54.18	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based reclassification of Suonthocola fibrivorans as a later heterotypic synonym of Diplocloster agilis.	Heng YC.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006616	2025
Genetics	Gut microbiome signatures in iNPH: Insights from a shotgun metagenomics study.	Park R, Chevalier C, Kieser S, Marizzoni M, Paquis A, Armand S, Scheffler M, Allali G, Assal F, Momjian S, Frisoni GB.	PLoS One	10.1371/journal.pone.0330251	2025
Phylogeny	Diplocloster agilis gen. nov., sp. nov. and Diplocloster modestus sp. nov., two novel anaerobic fermentative members of Lachnospiraceae isolated from human faeces.	Chaplin AV, Shcherbakova VA, Pikina AP, Sokolova SR, Korzhanova M, Belova VA, Korostin DO, Rebrikov DV, Kardonsky DA, Urban AS, Zakharzhevskaya NB, Suzina NE, Podoprigora IV, Das MS, Kholopova DO, Efimov BA	Int J Syst Evol Microbiol	10.1099/ijsem.0.005222	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Diplocloster agilis (VKM B-3497, JCM 34353, ASD5720)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_019042275

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media