Pseudomonas xionganensis (R-22-3 w-18, CGMCC 1.17250, KCTC 72658)

Name: Pseudomonas xionganensis (R-22-3 w-18, CGMCC 1.17250, KCTC 72658)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168122

Type strain

Strain Designation R-22-3 w-18

Culture col. no. R-22-3 w-18 CGMCC 1.17250 KCTC 72658

NCBI tax ID(s) 2654845

Special Collections KCTC

Links

Pseudomonas xionganensis R-22-3 w-18 is a prokaryote of the family Pseudomonadaceae.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 285801

KCTC 72658

@ref 20215

Last LPSN update 2025-12-16 10:10:16

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas xionganensis

Full scientific name Pseudomonas xionganensis Zhao et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439		93.9
125439	negative	99.5

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.7
125438		94.887

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM976324v1 assembly for Pseudomonas xionganensis R-22-3 w-18	scaffold	GCA_009763245	2654845.3	3007816207	2654845	73.7

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Pseudomonas xionganensis 16S ribosomal RNA gene, partial sequence	MN593501	1498		2654845

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas xionganensis R-22-3 w-18
NCBI: GCA_009763245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	93.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas xionganensis R-22-3 w-18
NCBI: GCA_009763245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	97.20	no
125438	aerobic	aerobicⓘ	yes	89.17	no
125438	spore-forming	spore-formingⓘ	no	94.89	no
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	87.15	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas xionganensis sp. nov., isolated from Baiyangdian Lake in Xiong'an New Area.	Zhao Y, Yang Y, He F, Wang C, Feng J, Zhang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004485	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas xionganensis (R-22-3 w-18, CGMCC 1.17250, KCTC 72658)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009763245

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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