Rufibacter immobilis (MCC P1, MCC 2268, CCTCC AB 2013351)

Name: Rufibacter immobilis (MCC P1, MCC 2268, CCTCC AB 2013351)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168120

Type strain

Strain Designation MCC P1

Culture col. no. MCC P1 MCC 2268 CCTCC AB 2013351

NCBI tax ID(s) 1348778

Rufibacter immobilis MCC P1 is a prokaryote of the family Hymenobacteraceae.

genome sequence 16S sequence

Name and taxonomic classification

Culture Collection Numbers

MCC P1 MCC 2268 CCTCC AB 2013351

@ref 20215

Last LPSN update 2025-12-16 10:10:16

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Rufibacter

Species Rufibacter immobilis

Full scientific name Rufibacter immobilis Polkade et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.335

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20215	1	Risk group

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM372156v1 assembly for Rufibacter immobilis MCC P1	scaffold	GCA_003721565	1348778.3	2839759663	1348778	75.53

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Rufibacter immobilis partial 16S rRNA gene, type strain MCC P1	HG316123	1454		1348778

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rufibacter immobilis MCC P1
NCBI: GCA_003721565.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.34	no
125438	anaerobic	anaerobicⓘ	no	96.27	no
125438	aerobic	aerobicⓘ	yes	89.00	no
125438	spore-forming	spore-formingⓘ	no	86.66	no
125438	thermophilic	thermophileⓘ	no	96.19	no
125438	flagellated	motile2+ⓘ	no	87.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rufibacter latericius sp. nov., isolated from Baiyang Lake.	Yang YZ, Chen JF, Huang WR, Zhang RR, Liu S, Wang C, Feng J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004500	2020
Phylogeny	Rufibacter sediminis sp. nov., isolated from freshwater lake sediment.	Qu JH, Zhang LJ, Fu YH, Li HF	Int J Syst Evol Microbiol	10.1099/ijsem.0.003177	2019
Phylogeny	Nibribacter flagellatus sp. nov., isolated from rhizosphere of Hibiscus syriacus and emended description of the genus Nibribacter.	Lin P, Yan ZF, Li CT, Kook M, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-018-1065-1	2018
Phylogeny	Rufibacter quisquiliarum sp. nov., a new member of the phylum Bacteroidetes isolated from a bioreactor treating landfill leachate.	Felfoldi T, Mentes A, Schumann P, Keki Z, Mathe I, Marialigeti K, Toth EM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001488	2016
Phylogeny	Rufibacter glacialis sp. nov., a psychrotolerant bacterium isolated from glacier soil.	Liu Q, Liu HC, Zhang JL, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000717	2015
Phylogeny	Rufibacter radiotolerans sp. nov., a novel gamma-radiation-resistant bacterium isolated from rice field.	Kim MK, Srinivasan S	Arch Microbiol	10.1007/s00203-020-02033-4	2020
Phylogeny	Rufibacter immobilis sp. nov., isolated from a high-altitude saline lake.	Polkade AV, Ramana VV, Joshi A, Pardesi L, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.000144	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

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Rufibacter immobilis (MCC P1, MCC 2268, CCTCC AB 2013351)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003721565

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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