Clostridium thermoaceticum (DSM 521, ATCC 35608, VPI 12954)

Name: Clostridium thermoaceticum (DSM 521, ATCC 35608, VPI 12954)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16811

Status isotype of 16812

Type strain

Strain Designation Fontaine

Culture col. no. DSM 521 ATCC 35608 VPI 12954 Fontaine JCM 9319 4 more

NCBI tax ID(s) 1525

Special Collections DSMZ JCM KCTC CIP

History DSMZ <- J. R. Andreesen, Universität Göttingen, Germany <- L. G. Ljungdahl <- H. G. Wood <- H. A. Barker <- F. E. Fontaine, University of Wisconsin, Departments of Biochemistry and Agricultural Bacteriology, Madison, USA JCM <-- E. Uematsu <-- ATCC 35608 <-- J. G. Zeikus strain Fontaine <-- E. McCoy <-- F. G. Fontaine. CIP <- 2004, CCUG <- J.R. Andreesen <- L.G. Ljungdahl <- H.G. Wood <- H.A. Barker <- F. Fontaine

Links

Clostridium thermoaceticum Fontaine is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from horse faeces.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41191

ATCC 35608,DSM 521,DSM 2955,JCM 9319,KCTC 3247,KCTC 5000,BCRC 14423,CCRC 14423,NRRL B-23504,CIP 108294

@ref 20215

Last LPSN update 2026-05-29 08:28:52

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium thermoaceticum

Full scientific name Clostridium thermoaceticum Fontaine et al. 1942 (Approved Lists 1980)

Synonyms (6)

Clostridium thermaceticum
Moorella thermoacetica
Neomoorella thermoacetica
Clostridium thermoautotrophicum
Moorella thermoautotrophica
Clostridium thermautotrophicum

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
123500	positive	rod-shaped

Colony morphology

123500

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
265	MOORELLA MEDIUM (DSMZ Medium 60)	Medium recipe at MediaDive	Name: MOORELLA MEDIUM (DSMZ Medium 60) Composition: Glucose 17.9462 g/l K2HPO4 6.97906 g/l Yeast extract 4.98505 g/l Tryptone 4.98505 g/l KH2PO4 4.48654 g/l Na2CO3 1.99402 g/l (NH4)2SO4 0.498505 g/l L-Cysteine HCl x H2O 0.299103 g/l Na2S x 9 H2O 0.299103 g/l MgSO4 x 7 H2O 0.0997009 g/l Fe(NH4)2(SO4)2 0.0398804 g/l Na2MoO4 x 2 H2O 0.00239283 g/l Sodium resazurin 0.000498505 g/l Na2SeO3 x 5 H2O 0.000149551 g/l Distilled water
32808	MEDIUM 224 - for anaerobic bacteria TGV		Distilled water make up to (1000.000 ml);Glucose (10.000 g);Yeast extract (20.000 g);Resazurin (2.000 mg);Trypto casein soy broth (30.000 g);L-Cysteine (0.500 g);Hemin solution - M00149 (25.000 ml);Vitamins solution - M00850 (10.000 ml)
123500	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
265	positive	growth	55
32808	positive	growth	55
67770	positive	growth	60

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
265	anaerobe
123500	anaerobe
125438	anaerobe	91.873
125439	anaerobe	99.319

Compound production

@ref	Compound
265	acetate kinase
265	formate dehydrogenase
265	formyltetrahydrofolate synthase

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123500	17057 ChEBI	cellobiose	-	degradation
123500	17108 ChEBI	D-arabinose	+	degradation
123500	15824 ChEBI	D-fructose	+	degradation
123500	17634 ChEBI	D-glucose	+	degradation
123500	65327 ChEBI	D-xylose	+	degradation
123500	4853 ChEBI	esculin	-	hydrolysis
123500	17716 ChEBI	lactose	-	degradation
123500	17306 ChEBI	maltose	-	degradation
123500	17632 ChEBI	nitrate	+	reduction
123500	17632 ChEBI	nitrate	+	respiration
123500	16301 ChEBI	nitrite	-	reduction
123500	17814 ChEBI	salicin	-	degradation
123500	17992 ChEBI	sucrose	-	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123500	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
67770	acetate kinase		2.7.2.1
123500	beta-galactosidase	-	3.2.1.23
123500	catalase	-	1.11.1.6
123500	gelatinase	-
123500	oxidase	-
123500	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Equidae (Horse)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type
265	horse faeces
67770	Horse feces
123500	Animal, Horse faeces

Taxonmaps

69479

Global distribution of 16S sequence AB572912 (>99% sequence identity) for Moorella thermoacetica from Microbeatlas

Aquatic Samples	257
Soil Samples	87
Animal Samples	219
Plant Samples	32
Total Samples	595

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
265	1	Risk group (German classification) According to TRBA 466
123500	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Moorella thermoacetica DSM 521	complete			2627853541	1525	99.68
66792	ASM126740v1 assembly for Neomoorella thermoacetica DSM 521	complete	GCA_001267405	1525.3	2834890540	1525	97.9
66792	Moorella thermoacetica DSM 521	complete			2596583675	1525	95.53
67770	ASM812188v1 assembly for Neomoorella thermoacetica ATCC 35608	contig	GCA_008121885	1525.21	8118214647	1525	73.26

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Moorella thermoacetica strain DSM 521 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence; and tRNA-Ile and tRNA-Ala genes, complete sequence	DQ192547	522	1525
20218	Moorella thermoacetica gene for 16S ribosomal RNA, partial sequence, strain: JCM 9319	AB572912	1529	1525
265	Moorella thermoacetica strain DSM 521 16S ribosomal RNA gene, partial sequence	AY656675	1430	1525

GC content

@ref	GC-content (mol%)	Method
265	56.0	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM126740v1 assembly for Neomoorella thermoacetica DSM 521
BV-BRC: 1525.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.32	no
125439	motility	BacteriaNetⓘ	no	60.08	no
125439	gram_stain	BacteriaNetⓘ	negative	69.97	no
125439	spore_formation	BacteriaNetⓘ	no	80.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Moorella thermoacetica DSM 521
NCBI: GCA_001267405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	54.17	no
125438	anaerobic	anaerobicⓘ	yes	91.87	yes
125438	aerobic	aerobicⓘ	no	93.09	yes
125438	spore-forming	spore-formingⓘ	yes	75.16	no
125438	thermophilic	thermophileⓘ	yes	78.86	yes
125438	flagellated	motile2+ⓘ	yes	67.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Energy conservation under extreme energy limitation: the role of cytochromes and quinones in acetogenic bacteria.	Rosenbaum FP, Muller V.	Extremophiles	10.1007/s00792-021-01241-0	2021
Metabolism	Cysteine: an overlooked energy and carbon source.	Gobbels L, Poehlein A, Dumnitch A, Egelkamp R, Kroger C, Haerdter J, Hackl T, Feld A, Weller H, Daniel R, Streit WR, Schoelmerich MC.	Sci Rep	10.1038/s41598-021-81103-z	2021
	Molecular interplay between ComEC domains allows for selective degradation of the non-translocating strand during natural transformation.	Stedman MJM, Deselaers S, Braus SAG, Wang D, Balaguer MG, Gossert AD, Hospenthal MK.	Nucleic Acids Res	10.1093/nar/gkaf932	2025
Metabolism	The DNA transporter ComEC has metal-dependent nuclease activity that is important for natural transformation.	Silale A, Lea SM, Berks BC.	Mol Microbiol	10.1111/mmi.14720	2021
	A comprehensive review of microbial fuel cells considering materials, methods, structures, and microorganisms.	Jalili P, Ala A, Nazari P, Jalili B, Ganji DD.	Heliyon	10.1016/j.heliyon.2024.e25439	2024
Metabolism	Carbon isotope fractionation of 11 acetogenic strains grown on H2 and CO2.	Blaser MB, Dreisbach LK, Conrad R.	Appl Environ Microbiol	10.1128/aem.03203-12	2013
	Acetate Production from Syngas Produced from Lignocellulosic Biomass Materials along with Gaseous Fermentation of the Syngas: A Review.	Harahap BM, Ahring BK.	Microorganisms	10.3390/microorganisms11040995	2023
	Domestication of the novel alcohologenic acetogen Clostridium sp. AWRP: from isolation to characterization for syngas fermentation.	Lee J, Lee JW, Chae CG, Kwon SJ, Kim YJ, Lee JH, Lee HS.	Biotechnol Biofuels	10.1186/s13068-019-1570-0	2019
Metabolism	Electron bifurcation involved in the energy metabolism of the acetogenic bacterium Moorella thermoacetica growing on glucose or H2 plus CO2.	Huang H, Wang S, Moll J, Thauer RK.	J Bacteriol	10.1128/jb.00385-12	2012
Metabolism	Evidence for a hexaheteromeric methylenetetrahydrofolate reductase in Moorella thermoacetica.	Mock J, Wang S, Huang H, Kahnt J, Thauer RK.	J Bacteriol	10.1128/jb.01839-14	2014
Metabolism	A reversible electron-bifurcating ferredoxin- and NAD-dependent [FeFe]-hydrogenase (HydABC) in Moorella thermoacetica.	Wang S, Huang H, Kahnt J, Thauer RK.	J Bacteriol	10.1128/jb.02158-12	2013
Genetics	Analysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria.	Shin J, Song Y, Jeong Y, Cho BK.	Front Microbiol	10.3389/fmicb.2016.01531	2016
Metabolism	Degradation of glyoxylate and glycolate with ATP synthesis by a thermophilic anaerobic bacterium, Moorella sp. strain HUC22-1.	Sakai S, Inokuma K, Nakashimada Y, Nishio N.	Appl Environ Microbiol	10.1128/aem.01421-07	2008
	CO₂ fixation by anaerobic non-photosynthetic mixotrophy for improved carbon conversion.	Jones SW, Fast AG, Carlson ED, Wiedel CA, Au J, Antoniewicz MR, Papoutsakis ET, Tracy BP.	Nat Commun	10.1038/ncomms12800	2016
Phylogeny	Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach.	Gagen EJ, Denman SE, Padmanabha J, Zadbuke S, Al Jassim R, Morrison M, McSweeney CS.	Appl Environ Microbiol	10.1128/aem.01679-10	2010
Enzymology	Recovery and analysis of formyltetrahydrofolate synthetase gene sequences from natural populations of acetogenic bacteria.	Leaphart AB, Lovell CR.	Appl Environ Microbiol	10.1128/aem.67.3.1392-1395.2001	2001
Metabolism	Hydrogen formation and its regulation in Ruminococcus albus: involvement of an electron-bifurcating [FeFe]-hydrogenase, of a non-electron-bifurcating [FeFe]-hydrogenase, and of a putative hydrogen-sensing [FeFe]-hydrogenase.	Zheng Y, Kahnt J, Kwon IH, Mackie RI, Thauer RK.	J Bacteriol	10.1128/jb.02070-14	2014
Metabolism	NADP-specific electron-bifurcating [FeFe]-hydrogenase in a functional complex with formate dehydrogenase in Clostridium autoethanogenum grown on CO.	Wang S, Huang H, Kahnt J, Mueller AP, Kopke M, Thauer RK.	J Bacteriol	10.1128/jb.00678-13	2013
Metabolism	Pulse-chase studies of the synthesis of acetyl-CoA by carbon monoxide dehydrogenase/acetyl-CoA synthase: evidence for a random mechanism of methyl and carbonyl addition.	Seravalli J, Ragsdale SW.	J Biol Chem	10.1074/jbc.m709470200	2008
	Genome-Based Comparison of All Species of the Genus Moorella, and Status of the Species Moorella thermoacetica and Moorella thermoautotrophica.	Redl S, Poehlein A, Esser C, Bengelsdorf FR, Jensen TO, Jendresen CB, Tindall BJ, Daniel R, Durre P, Nielsen AT.	Front Microbiol	10.3389/fmicb.2019.03070	2019
Metabolism	A CBS domain-containing pyrophosphatase of Moorella thermoacetica is regulated by adenine nucleotides.	Jamsen J, Tuominen H, Salminen A, Belogurov GA, Magretova NN, Baykov AA, Lahti R.	Biochem J	10.1042/bj20071017	2007
Enzymology	Direct quantification of the enteric bacterium Oxalobacter formigenes in human fecal samples by quantitative competitive-template PCR.	Sidhu H, Holmes RP, Allison MJ, Peck AB.	J Clin Microbiol	10.1128/jcm.37.5.1503-1509.1999	1999
	Converting CO₂ from biogas with H₂ into acetic acid in a trickle bed bioreactor with Moorella thermoacetica or a homoacetogenic mixed culture.	Chaudhuri A, Ahring BK.	Bioresour Technol	10.1016/j.biortech.2025.133443	2026
Enzymology	Purification and characterization of a thermophilic NAD⁺-dependent lactate dehydrogenase from Moorella thermoacetica.	Rosenbaum FP, Muller V.	FEBS Open Bio	10.1002/2211-5463.13964	2025
	N-glyceroyl alkylamine phosphoglycolipids dominate the lipidome of several Bacillota bacteria.	Bale NJ, Koenen M, Ding S, Sinninghe Damste JS.	Syst Appl Microbiol	10.1016/j.syapm.2025.126609	2025
	Carbon-negative bio-production of short-chain carboxylic acids (SCCAs) from syngas via the sequential two-stage bioprocess by Moorella thermoacetica and metabolically engineered Escherichia coli.	Fei P, Zhang W, Shang Y, Hu P, Gu Y, Luo Y, Wu H.	Bioresour Technol	10.1016/j.biortech.2024.131714	2025
	Proteomic and metabolic analysis of Moorella thermoacetica-g-C₃N₄ nanocomposite system for artificial photosynthesis.	Shen J, Qiao L.	Talanta	10.1016/j.talanta.2024.126479	2024
Enzymology	A novel hexameric NADP⁺ -reducing [FeFe] hydrogenase from Moorella thermoacetica.	Rosenbaum FP, Muller V.	FEBS J	10.1111/febs.16989	2024
	Enhancing acetone production from H₂ and CO₂ using supplemental electron acceptors in an engineered Moorella thermoacetica.	Takemura K, Kato J, Kato S, Fujii T, Wada K, Iwasaki Y, Aoi Y, Matsushika A, Morita T, Murakami K, Nakashimada Y.	J Biosci Bioeng	10.1016/j.jbiosc.2023.04.001	2023
	Genetic engineering of a thermophilic acetogen, Moorella thermoacetica Y72, to enable acetoin production.	Kato J, Fujii T, Kato S, Wada K, Watanabe M, Nakamichi Y, Aoi Y, Morita T, Murakami K, Nakashimada Y.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1398467	2024
	Humin-promoted microbial electrosynthesis of acetate from CO₂ by Moorella thermoacetica.	Ha BN, Pham DM, Masuda D, Kasai T, Katayama A.	Biotechnol Bioeng	10.1002/bit.28238	2022
	Methanol and Carbon Monoxide Metabolism of the Thermophile Moorella caeni.	Vecchini Santaella NA, Stams AJM, Sousa DZ.	Environ Microbiol	10.1111/1462-2920.70096	2025
	Cell-Free-Based Thermophilic Biocatalyst for the Synthesis of Amino Acids from One-Carbon Feedstocks.	Westenberg R, Chowdhury S, Cardiff R, Wennerholm K, Beliaev AS, Carothers JM, Peralta-Yahya P.	ACS Synth Biol	10.1021/acssynbio.5c00352	2025
	Energy-conserving dimethyl sulfoxide reduction in the acetogenic bacterium Moorella thermoacetica.	Rosenbaum FP, Poehlein A, Daniel R, Muller V.	Environ Microbiol	10.1111/1462-2920.15971	2022
Metabolism	Autotrophic growth and ethanol production enabled by diverting acetate flux in the metabolically engineered Moorella thermoacetica.	Takemura K, Kato J, Kato S, Fujii T, Wada K, Iwasaki Y, Aoi Y, Matsushika A, Murakami K, Nakashimada Y.	J Biosci Bioeng	10.1016/j.jbiosc.2021.08.005	2021
Enzymology	Effects of Nitrate on Hydrogenogenic Carbon Monoxide Oxidation in Parageobacillus thermoglucosidasius.	Katayama YA, Imaura Y, Inoue M, Okamoto S, Sako Y, Kamikawa R, Yoshida T.	Environ Microbiol Rep	10.1111/1758-2229.70133	2025
	Win-Win More Sustainable Routes for Acetic Acid Synthesis.	Medrano-Garcia JD, Calvo-Serrano R, Tian H, Guillen-Gosalbez G.	ACS Sustain Chem Eng	10.1021/acssuschemeng.4c07324	2025
	Anaerobic fermentation metabolism of Moorella thermoacetica inhibited by copper nanoparticles: Comprehensive analyses of transcriptional response and enzyme activity.	Wu Y, Wu J, Shen Q, Zheng X, Chen Y.	Water Res	10.1016/j.watres.2021.117081	2021
Enzymology	Isopropanol production via the thermophilic bioconversion of sugars and syngas using metabolically engineered Moorella thermoacetica.	Kato J, Matsuo T, Takemura K, Kato S, Fujii T, Wada K, Nakamichi Y, Watanabe M, Aoi Y, Morita T, Murakami K, Nakashimada Y.	Biotechnol Biofuels Bioprod	10.1186/s13068-024-02460-1	2024
Phylogeny	Isolation and characterization of novel acetogenic Moorella strains for employment as potential thermophilic biocatalysts.	Boer T, Engelhardt L, Luschen A, Eysell L, Yoshida H, Schneider D, Angenent LT, Basen M, Daniel R, Poehlein A.	FEMS Microbiol Ecol	10.1093/femsec/fiae109	2024
Metabolism	Thermophilic Moorella thermoacetica as a platform microorganism for C1 gas utilization: physiology, engineering, and applications.	Jia D, Deng W, Hu P, Jiang W, Gu Y.	Bioresour Bioprocess	10.1186/s40643-023-00682-z	2023
Enzymology	Lactate metabolism in strictly anaerobic microorganisms with a soluble NAD⁺ -dependent l-lactate dehydrogenase.	Rosenbaum FP, Poehlein A, Egelkamp R, Daniel R, Harder S, Schluter H, Schoelmerich MC.	Environ Microbiol	10.1111/1462-2920.15657	2021
Genetics	Compost Samples from Different Temperature Zones as a Model to Study Co-occurrence of Thermophilic and Psychrophilic Bacterial Population: a Metagenomics Approach.	Sunny JS, Natarajan A, Nisha K, Saleena LM.	Curr Microbiol	10.1007/s00284-021-02456-2	2021
Metabolism	Solar-Powered Organic Semiconductor-Bacteria Biohybrids for CO₂ Reduction into Acetic Acid.	Gai P, Yu W, Zhao H, Qi R, Li F, Liu L, Lv F, Wang S.	Angew Chem Int Ed Engl	10.1002/anie.202001047	2020
Metabolism	Ethanol yield and sugar usability in thermophilic ethanol production from lignocellulose hydrolysate by genetically engineered Moorella thermoacetica.	Rahayu F, Tajima T, Kato J, Kato S, Nakashimada Y.	J Biosci Bioeng	10.1016/j.jbiosc.2019.08.008	2020
Enzymology	A Versatile Aldehyde: Ferredoxin Oxidoreductase from the Organic Acid Reducing Thermoanaerobacter sp. Strain X514.	Nissen LS, Moon J, Hitschler L, Basen M.	Int J Mol Sci	10.3390/ijms25021077	2024
	Reversible Hydrogenase Activity Confers Flexibility to Balance Intracellular Redox in Moorella thermoacetica.	Kobayashi S, Kato J, Wada K, Takemura K, Kato S, Fujii T, Iwasaki Y, Aoi Y, Morita T, Matsushika A, Murakami K, Nakashimada Y.	Front Microbiol	10.3389/fmicb.2022.897066	2022
	Adapting gas fermenting bacteria for light-driven domino valorization of CO₂.	Su L, Rodriguez-Jimenez S, Short MIM, Reisner E.	Chem Sci	10.1039/d5sc00764j	2025
Enzymology	Gas channel rerouting in a primordial enzyme: Structural insights of the carbon-monoxide dehydrogenase/acetyl-CoA synthase complex from the acetogen Clostridium autoethanogenum.	Lemaire ON, Wagner T.	Biochim Biophys Acta Bioenerg	10.1016/j.bbabio.2020.148330	2021
	Exploring diazotrophic diversity: unveiling Nif core distribution and evolutionary patterns in nitrogen-fixing organisms.	Nichio BTL, Chaves RBR, Pedrosa FO, Raittz RT.	BMC Genomics	10.1186/s12864-024-10994-9	2025
	Two-stage conversion of syngas and pyrolysis aqueous condensate into L-malate.	Robazza A, Baleeiro FCF, Kleinsteuber S, Neumann A.	Biotechnol Biofuels Bioprod	10.1186/s13068-024-02532-2	2024
Metabolism	Insights into the Structure and Protein Composition of Moorella thermoacetica Spores Formed at Different Temperatures.	Malleck T, Fekraoui F, Bornard I, Henry C, Haudebourg E, Planchon S, Broussolle V.	Int J Mol Sci	10.3390/ijms23010550	2022
Metabolism	An alcove at the acetyl-CoA synthase nickel active site is required for productive substrate CO binding and anaerobic carbon fixation.	Wiley S, Griffith C, Eckert P, Mueller AP, Nogle R, Simpson SD, Kopke M, Can M, Sarangi R, Kubarych K, Ragsdale SW.	J Biol Chem	10.1016/j.jbc.2024.107503	2024
	Improved methyl supply for 5-methyltetrahydrofolate production in E. coli through a novel C1 transfer pathway.	Liu W, Guo J, Lu W, Cheng T, Li Y, Xian M, Zhang R.	Microb Cell Fact	10.1186/s12934-025-02707-y	2025
Metabolism	Biochemical properties and crystal structure of formate-tetrahydrofolate ligase from Methylobacterium extorquens CM4.	Kim S, Lee SH, Seo H, Kim KJ.	Biochem Biophys Res Commun	10.1016/j.bbrc.2020.05.198	2020
	Organic waste streams as feedstock for the production of high volume-low value products.	Pawar PR, Rao P, Prakash G, Lali AM.	Environ Sci Pollut Res Int	10.1007/s11356-020-07985-0	2021
	Evidence for corrin biosynthesis in the last universal common ancestor.	Modjewski LD, Karavaeva V, Mrnjavac N, Knopp M, Martin WF, Sousa FL.	FEBS J	10.1111/febs.17367	2025
Phylogeny	Isolation and genomic analysis of "Metallumcola ferriviriculae" MK1, a Gram-positive, Fe(III)-reducing bacterium from the Soudan Underground Mine, an iron-rich Martian analog site.	Hsu D, Flynn JR, Schuler CJ, Santelli CM, Toner BM, Bond DR, Gralnick JA.	Appl Environ Microbiol	10.1128/aem.00044-24	2024
Enzymology	Ultrafast electron transfer kinetics at semiconductor-microbe interface: key to efficient extracellular photoelectron utilization.	Du Y, Li Y, Li Y, Jin S, Ye H, Hou B, Hua T, Zhu J, Lu H, Lu A, Li T.	Appl Environ Microbiol	10.1128/aem.00138-25	2025
	Xylanolytic metabolism is regulated by coordination of transcription factors XynR and XylR in extremely thermophilic Caldicellulosiruptorales.	Manesh MJH, Crosby JR, Laemthong T, Bing RG, Chen SH, Vailionis J, Tanwee TNN, Zhang Y, Rodionov DA, Adams MWW, Kelly RM.	Appl Environ Microbiol	10.1128/aem.00516-25	2025
Enzymology	QM/MM computations reveal details of the acetyl-CoA synthase catalytic center.	Elghobashi-Meinhardt N, Tombolelli D, Mroginski MA.	Biochim Biophys Acta Gen Subj	10.1016/j.bbagen.2020.129579	2020
	Characterization of the nickel-inserting cyclometallase LarC from Moorella thermoacetica and identification of a cytidinylylated reaction intermediate.	Turmo A, Hu J, Hausinger RP.	Metallomics	10.1093/mtomcs/mfac014	2022
	Enhancement of lactate fraction in poly(lactate-co-3-hydroxybutyrate) biosynthesized by metabolically engineered E. coli.	Zhang B, Guo P, Sun X, Shang Y, Luo Y, Wu H.	Bioresour Bioprocess	10.1186/s40643-024-00803-2	2024
	Metabolic engineering of Moorella thermoacetica for thermophilic bioconversion of gaseous substrates to a volatile chemical.	Kato J, Takemura K, Kato S, Fujii T, Wada K, Iwasaki Y, Aoi Y, Matsushika A, Murakami K, Nakashimada Y.	AMB Express	10.1186/s13568-021-01220-w	2021
Biotechnology	Exploring the Potential of Syngas Fermentation for Recovery of High-Value Resources: A Comprehensive Review.	Neto AS, Wainaina S, Chandolias K, Piatek P, Taherzadeh MJ.	Curr Pollut Rep	10.1007/s40726-024-00337-3	2025
Genetics	A thermostable Cas9-based genome editing system for thermophilic acetogenic bacterium Thermoanaerobacter kivui.	Le Y, Liu X, Zhou S, Wu P, Zhang M, Sun J, Ni J, Wang H.	Appl Environ Microbiol	10.1128/aem.01170-25	2025
Metabolism	Effects of gas condition on acetic acid fermentation by Clostridium thermocellum and Moorella thermoacetica (C. thermoaceticum).	Rabemanolontsoa H, Van Nguyen D, Jusakulvjit P, Saka S.	Appl Microbiol Biotechnol	10.1007/s00253-017-8376-4	2017
Metabolism	Synergistic substrate cofeeding stimulates reductive metabolism.	Park JO, Liu N, Holinski KM, Emerson DF, Qiao K, Woolston BM, Xu J, Lazar Z, Islam MA, Vidoudez C, Girguis PR, Stephanopoulos G.	Nat Metab	10.1038/s42255-019-0077-0	2019
	Temperature impacts the sporulation capacities and spore resistance of Moorella thermoacetica.	Malleck T, Daufouy G, Andre S, Broussolle V, Planchon S.	Food Microbiol	10.1016/j.fm.2017.11.017	2018
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Enzymology	Reduction, evolutionary pattern and positive selection of genes encoding formate dehydrogenase in Wood-Ljungdahl pathway of gastrointestinal acetogens suggests their adaptation to formate-rich habitats.	Yao Y, Fu B, Han D, Zhang Y, Wei Z, Liu H.	Environ Microbiol Rep	10.1111/1758-2229.13129	2023
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Metabolism	High-Throughput Screening of Coenzyme Preference Change of Thermophilic 6-Phosphogluconate Dehydrogenase from NADP(+) to NAD(.).	Huang R, Chen H, Zhong C, Kim JE, Zhang YH.	Sci Rep	10.1038/srep32644	2016
Metabolism	Selenium controls transcription of paralogous formate dehydrogenase genes in the termite gut acetogen, Treponema primitia.	Matson EG, Zhang X, Leadbetter JR.	Environ Microbiol	10.1111/j.1462-2920.2010.02188.x	2010
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Enzymology	Functional Classification of Super-Large Families of Enzymes Based on Substrate Binding Pocket Residues for Biocatalysis and Enzyme Engineering Applications.	Sirota FL, Maurer-Stroh S, Li Z, Eisenhaber F, Eisenhaber B.	Front Bioeng Biotechnol	10.3389/fbioe.2021.701120	2021
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Metabolism	Carbon Isotope Fractionation during Catabolism and Anabolism in Acetogenic Bacteria Growing on Different Substrates.	Freude C, Blaser M.	Appl Environ Microbiol	10.1128/aem.03502-15	2016
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Biotechnology	Phenotypic and genotypic characterization of some Moorella sp. strains isolated from canned foods.	Carlier JP, Bedora-Faure M.	Syst Appl Microbiol	10.1016/j.syapm.2006.01.002	2006
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Enzymology	A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.	Jeoung JH, Fesseler J, Domnik L, Klemke F, Sinnreich M, Teutloff C, Dobbek H.	Angew Chem Int Ed Engl	10.1002/anie.202117000	2022
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Enzymology	Energy-Conserving Enzyme Systems Active During Syntrophic Acetate Oxidation in the Thermophilic Bacterium Thermacetogenium phaeum.	Keller A, Schink B, Muller N.	Front Microbiol	10.3389/fmicb.2019.02785	2019
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Metabolism	Physiology of the thermophilic acetogen Moorella thermoacetica.	Drake HL, Daniel SL.	Res Microbiol	10.1016/j.resmic.2004.10.002	2004
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Enzymology	A Novel NADP-Dependent Formate Dehydrogenase From the Hyperthermophilic Archaeon Thermococcus onnurineus NA1.	Yang JI, Lee SH, Ryu JY, Lee HS, Kang SG.	Front Microbiol	10.3389/fmicb.2022.844735	2022
Transcriptome	Metabolic changes of the acetogen Clostridium sp. AWRP through adaptation to acetate challenge.	Kwon SJ, Lee J, Lee HS.	Front Microbiol	10.3389/fmicb.2022.982442	2022
Metabolism	Conformational switches in winged-helix domains 1 and 2 of bacterial translation elongation factor SelB.	Ganichkin O, Wahl MC.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444907042229	2007
Metabolism	Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis.	Shi K, Cho S, Aukema KG, Lee T, Bera AK, Seffernick JL, Wackett LP, Aihara H.	PLoS One	10.1371/journal.pone.0216979	2019
Enzymology	Formate-driven H₂ production by whole cells of Thermoanaerobacter kivui.	Burger Y, Schwarz FM, Muller V.	Biotechnol Biofuels Bioprod	10.1186/s13068-022-02147-5	2022
Metabolism	Electrosynthesis of organic compounds from carbon dioxide is catalyzed by a diversity of acetogenic microorganisms.	Nevin KP, Hensley SA, Franks AE, Summers ZM, Ou J, Woodard TL, Snoeyenbos-West OL, Lovley DR.	Appl Environ Microbiol	10.1128/aem.02642-10	2011
Enzymology	Genome-Scale Mining of Acetogens of the Genus Clostridium Unveils Distinctive Traits in [FeFe]- and [NiFe]-Hydrogenase Content and Maturation.	Di Leonardo PF, Antonicelli G, Agostino V, Re A.	Microbiol Spectr	10.1128/spectrum.01019-22	2022
Metabolism	Molecular switch in tandem winged-helix motifs of elongation factor SelB.	Soler N, Fourmy D, Yoshizawa S.	Nucleic Acids Symp Ser (Oxf)	10.1093/nass/nrm189	2007
Enzymology	X-ray crystal structures of Moorella thermoacetica FprA. Novel diiron site structure and mechanistic insights into a scavenging nitric oxide reductase.	Silaghi-Dumitrescu R, Kurtz DM, Ljungdahl LG, Lanzilotta WN.	Biochemistry	10.1021/bi0473049	2005
Metabolism	Oxalate metabolism by the acetogenic bacterium Moorella thermoacetica.	Daniel SL, Pilsl C, Drake HL.	FEMS Microbiol Lett	10.1016/s0378-1097(03)00924-8	2004
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Metabolism	Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB.	Soler N, Fourmy D, Yoshizawa S.	J Mol Biol	10.1016/j.jmb.2007.05.001	2007
Metabolism	Towards understanding selenocysteine incorporation into bacterial proteins.	Fischer N, Paleskava A, Gromadski KB, Konevega AL, Wahl MC, Stark H, Rodnina MV.	Biol Chem	10.1515/bc.2007.108	2007
Enzymology	High-Resolution X-Ray Structures of Two Functionally Distinct Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes.	Peat TS, Balotra S, Wilding M, Hartley CJ, Newman J, Scott C.	Appl Environ Microbiol	10.1128/aem.03365-16	2017
Metabolism	Defining sequence space and reaction products within the cyanuric acid hydrolase (AtzD)/barbiturase protein family.	Seffernick JL, Erickson JS, Cameron SM, Cho S, Dodge AG, Richman JE, Sadowsky MJ, Wackett LP.	J Bacteriol	10.1128/jb.00791-12	2012
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Metabolism	Tunnel mutagenesis and Ni-dependent reduction and methylation of the alpha subunit of acetyl coenzyme A synthase/carbon monoxide dehydrogenase.	Tan X, Lindahl PA.	J Biol Inorg Chem	10.1007/s00775-008-0363-x	2008
Metabolism	Nitrite as an energy-conserving electron sink for the acetogenic bacterium Moorella thermoacetica.	Seifritz C, Drake HL, Daniel SL.	Curr Microbiol	10.1007/s00284-002-3830-6	2003
Metabolism	Na+-pyrophosphatase: a novel primary sodium pump.	Malinen AM, Belogurov GA, Baykov AA, Lahti R.	Biochemistry	10.1021/bi700564b	2007
Enzymology	Highly selective electrocatalytic conversion of CO2 to CO at -0.57 V (NHE) by carbon monoxide dehydrogenase from Moorella thermoacetica.	Shin W, Lee SH, Shin JW, Lee SP, Kim Y.	J Am Chem Soc	10.1021/ja037370i	2003
Metabolism	Monomeric NADH-Oxidizing Methylenetetrahydrofolate Reductases from Mycobacterium smegmatis Lack Flavin Coenzyme.	Sah S, Lahry K, Talwar C, Singh S, Varshney U.	J Bacteriol	10.1128/jb.00709-19	2020
Enzymology	Crystallographic evidence for a CO/CO(2) tunnel gating mechanism in the bifunctional carbon monoxide dehydrogenase/acetyl coenzyme A synthase from Moorella thermoacetica.	Volbeda A, Fontecilla-Camps JC.	J Biol Inorg Chem	10.1007/s00775-004-0565-9	2004
Phylogeny	Characterization of bacterial community structure during in-vessel composting of agricultural waste by 16S rRNA sequencing.	Varma VS, Dhamodharan K, Kalamdhad AS.	3 Biotech	10.1007/s13205-018-1319-7	2018
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Metabolism	Silica Gel for Enhanced Activity and Hypochlorite Protection of Cyanuric Acid Hydrolase in Recombinant Escherichia coli.	Radian A, Aukema KG, Aksan A, Wackett LP.	mBio	10.1128/mbio.01477-15	2015
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Enzymology	The monofunctional CO dehydrogenase CooS is essential for growth of Thermoanaerobacter kivui on carbon monoxide.	Jain S, Katsyv A, Basen M, Muller V.	Extremophiles	10.1007/s00792-021-01251-y	2021
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Enzymology	A Third Way of Energy Conservation in Acetogenic Bacteria.	Kremp F, Roth J, Muller V.	Microbiol Spectr	10.1128/spectrum.01385-22	2022
Genetics	Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome.	Frank JA, Arntzen MO, Sun L, Hagen LH, McHardy AC, Horn SJ, Eijsink VG, Schnurer A, Pope PB.	mSystems	10.1128/msystems.00092-16	2016
Enzymology	An essential role of the reversible electron-bifurcating hydrogenase Hnd for ethanol oxidation in Solidesulfovibrio fructosivorans.	Kpebe A, Guendon C, Payne N, Ros J, Khelil Berbar M, Lebrun R, Baffert C, Shintu L, Brugna M.	Front Microbiol	10.3389/fmicb.2023.1139276	2023
Genetics	Effect of Sulfate on Carbon Monoxide Conversion by a Thermophilic Syngas-Fermenting Culture Dominated by a Desulfofundulus Species.	Alves JI, Visser M, Arantes AL, Nijsse B, Plugge CM, Alves MM, Stams AJM, Sousa DZ.	Front Microbiol	10.3389/fmicb.2020.588468	2020
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Enzymology	Bacterial Cyanuric Acid Hydrolase for Water Treatment.	Yeom S, Mutlu BR, Aksan A, Wackett LP.	Appl Environ Microbiol	10.1128/aem.02175-15	2015
Pathogenicity	Influence of nitrate on oxalate- and glyoxylate-dependent growth and acetogenesis by Moorella thermoacetica.	Seifritz C, Frostl JM, Drake HL, Daniel SL.	Arch Microbiol	10.1007/s00203-002-0475-6	2002
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Metabolism	Crystallization and preliminary X-ray analysis of RsbS from Moorella thermoacetica at 2.5 A resolution.	Quin M, Newman J, Firbank S, Lewis RJ, Marles-Wright J.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309108003849	2008
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Biotechnology	Microbial electrosynthesis of methane and acetate-comparison of pure and mixed cultures.	Hengsbach JN, Sabel-Becker B, Ulber R, Holtmann D.	Appl Microbiol Biotechnol	10.1007/s00253-022-12031-9	2022
Metabolism	It does not always take two to tango: "Syntrophy" via hydrogen cycling in one bacterial cell.	Wiechmann A, Ciurus S, Oswald F, Seiler VN, Muller V.	ISME J	10.1038/s41396-020-0627-1	2020
	A flavodiiron protein and high molecular weight rubredoxin from Moorella thermoacetica with nitric oxide reductase activity.	Silaghi-Dumitrescu R, Coulter ED, Das A, Ljungdahl LG, Jameson GN, Huynh BH, Kurtz DM.	Biochemistry	10.1021/bi027253k	2003
	Development of Hypertolerant Strain of Yarrowia lipolytica Accumulating Succinic Acid Using High Levels of Acetate.	Narisetty V, Prabhu AA, Bommareddy RR, Cox R, Agrawal D, Misra A, Haider MA, Bhatnagar A, Pandey A, Kumar V.	ACS Sustain Chem Eng	10.1021/acssuschemeng.2c02408	2022
Metabolism	Second messengers and divergent HD-GYP phosphodiesterases regulate 3',3'-cGAMP signaling.	Wright TA, Jiang L, Park JJ, Anderson WA, Chen G, Hallberg ZF, Nan B, Hammond MC.	Mol Microbiol	10.1111/mmi.14412	2020
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Metabolism	Formate-Dependent Acetogenic Utilization of Glucose by the Fecal Acetogen Clostridium bovifaecis.	Yao Y, Fu B, Han D, Zhang Y, Liu H.	Appl Environ Microbiol	10.1128/aem.01870-20	2020
Biotechnology	Energy Efficiency and Productivity Enhancement of Microbial Electrosynthesis of Acetate.	LaBelle EV, May HD.	Front Microbiol	10.3389/fmicb.2017.00756	2017
Biotechnology	Nonmetallic Abiotic-Biological Hybrid Photocatalyst for Visible Water Splitting and Carbon Dioxide Reduction.	Tremblay PL, Xu M, Chen Y, Zhang T.	iScience	10.1016/j.isci.2019.100784	2020
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Enzymology	Ancient Evolution and Recent Evolution Converge for the Biodegradation of Cyanuric Acid and Related Triazines.	Seffernick JL, Wackett LP.	Appl Environ Microbiol	10.1128/aem.03594-15	2016
Phylogeny	Novel strains of Moorella thermoacetica form unusually heat-resistant spores.	Byrer DE, Rainey FA, Wiegel J.	Arch Microbiol	10.1007/s002030000211	2000
	Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium.	Lo J, Wu C, Humphreys JR, Yang B, Jiang Z, Wang X, Maness P, Tsesmetzis N, Xiong W.	mSystems	10.1128/msystems.01274-22	2023
	Molecular insights into intra-complex signal transmission during stressosome activation.	Miksys A, Fu L, Madej MG, Guerreiro DN, Kaltwasser S, Conway M, Ejder S, Bruckmann A, Marles-Wright J, Lewis RJ, O'Byrne C, Pane-Farre J, Ziegler C.	Commun Biol	10.1038/s42003-022-03549-9	2022
Metabolism	Thermostable cyanuric acid hydrolase from Moorella thermoacetica ATCC 39073.	Li Q, Seffernick JL, Sadowsky MJ, Wackett LP.	Appl Environ Microbiol	10.1128/aem.01605-09	2009
Metabolism	Key Enzymes of the Semiphosphorylative Entner-Doudoroff Pathway in the Haloarchaeon Haloferax volcanii: Characterization of Glucose Dehydrogenase, Gluconate Dehydratase, and 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase.	Sutter JM, Tastensen JB, Johnsen U, Soppa J, Schonheit P.	J Bacteriol	10.1128/jb.00286-16	2016
	A surface-display biohybrid approach to light-driven hydrogen production in air.	Wei W, Sun P, Li Z, Song K, Su W, Wang B, Liu Y, Zhao J.	Sci Adv	10.1126/sciadv.aap9253	2018
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	Inactivation of acetyl-CoA synthase/carbon monoxide dehydrogenase by copper.	Bramlett MR, Tan X, Lindahl PA.	J Am Chem Soc	10.1021/ja0352855	2003
	Effect of sodium sulfide on Ni-containing carbon monoxide dehydrogenases.	Feng J, Lindahl PA.	J Am Chem Soc	10.1021/ja048811g	2004
Metabolism	Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase.	Wittenborn EC, Merrouch M, Ueda C, Fradale L, Leger C, Fourmond V, Pandelia ME, Dementin S, Drennan CL.	Elife	10.7554/elife.39451	2018
Enzymology	Electrochemical Characterization of a Complex FeFe Hydrogenase, the Electron-Bifurcating Hnd From Desulfovibrio fructosovorans.	Jacq-Bailly A, Benvenuti M, Payne N, Kpebe A, Felbek C, Fourmond V, Leger C, Brugna M, Baffert C.	Front Chem	10.3389/fchem.2020.573305	2020
	Photocatalyst-mineralized biofilms as living bio-abiotic interfaces for single enzyme to whole-cell photocatalytic applications.	Wang X, Zhang J, Li K, An B, Wang Y, Zhong C.	Sci Adv	10.1126/sciadv.abm7665	2022
Metabolism	The tunnel of acetyl-coenzyme a synthase/carbon monoxide dehydrogenase regulates delivery of CO to the active site.	Tan X, Loke HK, Fitch S, Lindahl PA.	J Am Chem Soc	10.1021/ja043701v	2005
Metabolism	A modified serine cycle in Escherichia coli coverts methanol and CO₂ to two-carbon compounds.	Yu H, Liao JC.	Nat Commun	10.1038/s41467-018-06496-4	2018
Metabolism	Homoacetogenesis in Deep-Sea Chloroflexi, as Inferred by Single-Cell Genomics, Provides a Link to Reductive Dehalogenation in Terrestrial Dehalococcoidetes.	Sewell HL, Kaster AK, Spormann AM.	mBio	10.1128/mbio.02022-17	2017
	Rebalancing Redox to Improve Biobutanol Production by Clostridium tyrobutyricum.	Ma C, Ou J, Xu N, Fierst JL, Yang ST, Liu X, Liu X.	Bioengineering (Basel)	10.3390/bioengineering3010002	2015
Metabolism	Bioaugmentation with Mixed Hydrogen-Producing Acetogen Cultures Enhances Methane Production in Molasses Wastewater Treatment.	Wang S, Li J, Zheng G, Du G, Li J.	Archaea	10.1155/2018/4634898	2018
Enzymology	Electron carriers involved in autotrophic and heterotrophic acetogenesis in the thermophilic bacterium Thermoanaerobacter kivui.	Katsyv A, Jain S, Basen M, Muller V.	Extremophiles	10.1007/s00792-021-01247-8	2021
Metabolism	Anaerobic Dechlorination by a Humin-Dependent Pentachlorophenol-Dechlorinating Consortium under Autotrophic Conditions Induced by Homoacetogenesis.	Laskar M, Awata T, Kasai T, Katayama A.	Int J Environ Res Public Health	10.3390/ijerph16162873	2019
	Cation binding and thermostability of FTHFS monovalent cation binding sites and thermostability of N10-formyltetrahydrofolate synthetase from Moorella thermoacetica.	Radfar R, Leaphart A, Brewer JM, Minor W, Odom JD, Dunlap RB, Lovell CR, Lebioda L.	Biochemistry	10.1021/bi001577w	2000
Metabolism	A novel cellulolytic, anaerobic, and thermophilic bacterium, Moorella sp. strain F21.	Karita S, Nakayama K, Goto M, Sakka K, Kim WJ, Ogawa S.	Biosci Biotechnol Biochem	10.1271/bbb.67.183	2003
	Genetic Evidence Reveals the Indispensable Role of the rseC Gene for Autotrophy and the Importance of a Functional Electron Balance for Nitrate Reduction in Clostridium ljungdahlii.	Klask CM, Jager B, Casini I, Angenent LT, Molitor B.	Front Microbiol	10.3389/fmicb.2022.887578	2022
Metabolism	Reduction and methyl transfer kinetics of the alpha subunit from acetyl coenzyme a synthase.	Tan X, Sewell C, Yang Q, Lindahl PA.	J Am Chem Soc	10.1021/ja028442t	2003
Metabolism	Autocatalytic activation of acetyl-CoA synthase.	Maynard EL, Tan X, Lindahl PA.	J Biol Inorg Chem	10.1007/s00775-004-0528-1	2004
	Deltaproteobacterium Strain KaireiS1, a Mesophilic, Hydrogen-Oxidizing and Sulfate-Reducing Bacterium From an Inactive Deep-Sea Hydrothermal Chimney.	Adam N, Han Y, Laufer-Meiser K, Bahrle R, Schwarz-Schampera U, Schippers A, Perner M.	Front Microbiol	10.3389/fmicb.2021.686276	2021
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Metabolism	Techno-Economic Analysis of Producing Glacial Acetic Acid from Poplar Biomass via Bioconversion.	Morales-Vera R, Crawford J, Dou C, Bura R, Gustafson R.	Molecules	10.3390/molecules25184328	2020
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Enzymology	The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica.	Radfar R, Shin R, Sheldrick GM, Minor W, Lovell CR, Odom JD, Dunlap RB, Lebioda L.	Biochemistry	10.1021/bi992790z	2000
	Influence of Culture Conditions on the Bioreduction of Organic Acids to Alcohols by Thermoanaerobacter pseudoethanolicus.	Scully SM, Brown AE, Mueller-Hilger Y, Ross AB, Orlygsson J.	Microorganisms	10.3390/microorganisms9010162	2021
Enzymology	Impact of the Dimethyl Sulfoxide Reductase Superfamily on the Evolution of Biogeochemical Cycles.	Wells M, Kim M, Akob DM, Basu P, Stolz JF.	Microbiol Spectr	10.1128/spectrum.04145-22	2023
	Visualizing the superfamily of metallo-beta-lactamases through sequence similarity network neighborhood connectivity analysis.	Gonzalez JM.	Heliyon	10.1016/j.heliyon.2020.e05867	2021
	Ni-Zn-[Fe4-S4] and Ni-Ni-[Fe4-S4] clusters in closed and open subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase.	Darnault C, Volbeda A, Kim EJ, Legrand P, Vernede X, Lindahl PA, Fontecilla-Camps JC.	Nat Struct Biol	10.1038/nsb912	2003
Metabolism	The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: purification and properties.	Laukel M, Chistoserdova L, Lidstrom ME, Vorholt JA.	Eur J Biochem	10.1046/j.1432-1033.2003.03391.x	2003
Biotechnology	Applications of Synthetic Biotechnology on Carbon Neutrality Research: A Review on Electrically Driven Microbial and Enzyme Engineering.	Zhuang X, Zhang Y, Xiao AF, Zhang A, Fang B.	Front Bioeng Biotechnol	10.3389/fbioe.2022.826008	2022
Metabolism	Small protein folds at the root of an ancient metabolic network.	Raanan H, Poudel S, Pike DH, Nanda V, Falkowski PG.	Proc Natl Acad Sci U S A	10.1073/pnas.1914982117	2020
Enzymology	Purification, crystallization and preliminary X-ray crystallographic analysis of the phosphatase domain (PA3346PD) of the response regulator PA3346 from Pseudomonas aeruginosa PAO1.	Chen LY, Wu PH, Guan HH, Fun HK, Chang HY, Chen CJ.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x15004197	2015
Transcriptome	Transcriptome analysis of a thermophilic and hydrogenogenic carboxydotroph Carboxydothermus pertinax.	Fukuyama Y, Omae K, Yoshida T, Sako Y.	Extremophiles	10.1007/s00792-019-01091-x	2019
Enzymology	Isolation, crystallization and preliminary X-ray analysis of a methanol-induced corrinoid protein from Moorella thermoacetica.	Zhou W, Das A, Habel JE, Liu ZJ, Chang J, Chen L, Lee D, Nguyen D, Chang SH, Tempel W, Rose JP, Ljungdahl LG, Wang BC.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309105010511	2005
Metabolism	A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase.	Doukov TI, Iverson TM, Seravalli J, Ragsdale SW, Drennan CL.	Science	10.1126/science.1075843	2002
Metabolism	Energy conservation by a hydrogenase-dependent chemiosmotic mechanism in an ancient metabolic pathway.	Schoelmerich MC, Muller V.	Proc Natl Acad Sci U S A	10.1073/pnas.1818580116	2019
Genetics	Deep-branching acetogens in serpentinized subsurface fluids of Oman.	Colman DR, Kraus EA, Thieringer PH, Rempfert K, Templeton AS, Spear JR, Boyd ES.	Proc Natl Acad Sci U S A	10.1073/pnas.2206845119	2022
	Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM.	Arantes AL, Moreira JPC, Diender M, Parshina SN, Stams AJM, Alves MM, Alves JI, Sousa DZ.	Front Microbiol	10.3389/fmicb.2020.00058	2020
Enzymology	Formate Is Required for Growth of the Thermophilic Acetogenic Bacterium Thermoanaerobacter kivui Lacking Hydrogen-Dependent Carbon Dioxide Reductase (HDCR).	Jain S, Dietrich HM, Muller V, Basen M.	Front Microbiol	10.3389/fmicb.2020.00059	2020
Enzymology	Obligate autotrophy at the thermodynamic limit of life in a new acetogenic bacterium.	Frolov EN, Elcheninov AG, Gololobova AV, Toshchakov SV, Novikov AA, Lebedinsky AV, Kublanov IV.	Front Microbiol	10.3389/fmicb.2023.1185739	2023
	Revealing formate production from carbon monoxide in wild type and mutants of Rnf- and Ech-containing acetogens, Acetobacterium woodii and Thermoanaerobacter kivui.	Schwarz FM, Ciurus S, Jain S, Baum C, Wiechmann A, Basen M, Muller V.	Microb Biotechnol	10.1111/1751-7915.13663	2020
Transcriptome	The Complete Genome Sequence of Clostridium aceticum: a Missing Link between Rnf- and Cytochrome-Containing Autotrophic Acetogens.	Poehlein A, Cebulla M, Ilg MM, Bengelsdorf FR, Schiel-Bengelsdorf B, Whited G, Andreesen JR, Gottschalk G, Daniel R, Durre P.	mBio	10.1128/mbio.01168-15	2015
	A general mechanism for initiating the bacterial general stress response	Baral R, Ho K, Kumar R, Hopkins J, Watkins M, LaRussa S, Caban-Penix S, Calderone L, Bradshaw N.	Elife
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Metabolism	Structure and function of an unusual flavodoxin from the domain Archaea.	Prakash D, Iyer PR, Suharti S, Walters KA, Santiago-Martinez MG, Golbeck JH, Murakami KS, Ferry JG.	Proc Natl Acad Sci U S A	10.1073/pnas.1908578116	2019
Metabolism	Analysis of propionate-degrading consortia from agricultural biogas plants.	Ahlert S, Zimmermann R, Ebling J, Konig H.	Microbiologyopen	10.1002/mbo3.386	2016
Metabolism	Crystallization and preliminary X-ray analysis of the mRNA-binding domain of elongation factor SelB in complex with RNA.	Rasubala L, Fourmy D, Ose T, Kohda D, Maenaka K, Yoshizawa S.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309105003611	2005
	Studies on Syngas Fermentation With Clostridium carboxidivorans in Stirred-Tank Reactors With Defined Gas Impurities.	Ruckel A, Hannemann J, Maierhofer C, Fuchs A, Weuster-Botz D.	Front Microbiol	10.3389/fmicb.2021.655390	2021
Metabolism	A Heterodimeric Reduced-Ferredoxin-Dependent Methylenetetrahydrofolate Reductase from Syngas-Fermenting Clostridium ljungdahlii.	Yi J, Huang H, Liang J, Wang R, Liu Z, Li F, Wang S.	Microbiol Spectr	10.1128/spectrum.00958-21	2021
Metabolism	Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum.	Oehler D, Poehlein A, Leimbach A, Muller N, Daniel R, Gottschalk G, Schink B.	BMC Genomics	10.1186/1471-2164-13-723	2012
Metabolism	Mechanism of N10-formyltetrahydrofolate synthetase derived from complexes with intermediates and inhibitors.	Celeste LR, Chai G, Bielak M, Minor W, Lovelace LL, Lebioda L.	Protein Sci	10.1002/pro.2005	2012
Enzymology	Cystathionine beta-Synthase (CBS) Domain-containing Pyrophosphatase as a Target for Diadenosine Polyphosphates in Bacteria.	Anashkin VA, Salminen A, Tuominen HK, Orlov VN, Lahti R, Baykov AA.	J Biol Chem	10.1074/jbc.m115.680272	2015
	Dynamics of a Perturbed Microbial Community during Thermophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds.	Safaric L, Shakeri Yekta S, Liu T, Svensson BH, Schnurer A, Bastviken D, Bjorn A.	Microorganisms	10.3390/microorganisms6040105	2018
	Structural insights into stressosome assembly.	Kwon E, Pathak D, Kim HU, Dahal P, Ha SC, Lee SS, Jeong H, Jeoung D, Chang HW, Jung HS, Kim DY.	IUCrJ	10.1107/s205225251900945x	2019
Metabolism	The carbonic anhydrase of Clostridium autoethanogenum represents a new subclass of beta-carbonic anhydrases.	Pander B, Harris G, Scott DJ, Winzer K, Kopke M, Simpson SD, Minton NP, Henstra AM.	Appl Microbiol Biotechnol	10.1007/s00253-019-10015-w	2019
Enzymology	Energy-converting hydrogenases: the link between H₂ metabolism and energy conservation.	Schoelmerich MC, Muller V.	Cell Mol Life Sci	10.1007/s00018-019-03329-5	2020
	A Prospective Study on the Fermentation Landscape of Gaseous Substrates to Biorenewables Using Methanosarcina acetivorans Metabolic Model.	Nazem-Bokaee H, Maranas CD.	Front Microbiol	10.3389/fmicb.2018.01855	2018
Enzymology	Carbon monoxide-dependent transcriptional changes in a thermophilic, carbon monoxide-utilizing, hydrogen-evolving bacterium Calderihabitans maritimus KKC1 revealed by transcriptomic analysis.	Inoue M, Izumihara H, Fukuyama Y, Omae K, Yoshida T, Sako Y.	Extremophiles	10.1007/s00792-020-01175-z	2020
Metabolism	Light-driven carbon-carbon bond formation via CO₂ reduction catalyzed by complexes of CdS nanorods and a 2-oxoacid oxidoreductase.	Hamby H, Li B, Shinopoulos KE, Keller HR, Elliott SJ, Dukovic G.	Proc Natl Acad Sci U S A	10.1073/pnas.1903948116	2020
Metabolism	Energy Conservation Model Based on Genomic and Experimental Analyses of a Carbon Monoxide-Utilizing, Butyrate-Forming Acetogen, Eubacterium limosum KIST612.	Jeong J, Bertsch J, Hess V, Choi S, Choi IG, Chang IS, Muller V.	Appl Environ Microbiol	10.1128/aem.00675-15	2015
Metabolism	Proteome adaptations of the organohalide-respiring Desulfitobacterium hafniense strain DCB-2 to various energy metabolisms.	Willemin MS, Hamelin R, Armand F, Holliger C, Maillard J.	Front Microbiol	10.3389/fmicb.2023.1058127	2023
Metabolism	3,6-Dichlorosalicylate Catabolism Is Initiated by the DsmABC Cytochrome P450 Monooxygenase System in Rhizorhabdus dicambivorans Ndbn-20.	Li N, Yao L, He Q, Qiu J, Cheng D, Ding D, Tao Q, He J, Jiang J.	Appl Environ Microbiol	10.1128/aem.02133-17	2018
	A Molecular Biology Tool Kit for the Phototrophic Firmicute Heliobacterium modesticaldum.	Baker PL, Orf GS, Khan Z, Espinoza L, Leung S, Kevershan K, Redding KE.	Appl Environ Microbiol	10.1128/aem.01287-19	2019
	Copper Tolerance Mechanism of the Novel Marine Multi-Stress Tolerant Yeast Meyerozyma guilliermondii GXDK6 as Revealed by Integrated Omics Analysis.	Bu R, Yan B, Sun H, Zhou M, Bai H, Cai X, Mo X, Su G, Jiang C.	Front Microbiol	10.3389/fmicb.2021.771878	2021
	Natural Extracellular Electron Transfer Between Semiconducting Minerals and Electroactive Bacterial Communities Occurred on the Rock Varnish.	Ren G, Yan Y, Nie Y, Lu A, Wu X, Li Y, Wang C, Ding H.	Front Microbiol	10.3389/fmicb.2019.00293	2019
Metabolism	Cyanuric Acid Biodegradation via Biuret: Physiology, Taxonomy, and Geospatial Distribution.	Aukema KG, Tassoulas LJ, Robinson SL, Konopatski JF, Bygd MD, Wackett LP.	Appl Environ Microbiol	10.1128/aem.01964-19	2020
Metabolism	Clostridium difficile is an autotrophic bacterial pathogen.	Kopke M, Straub M, Durre P.	PLoS One	10.1371/journal.pone.0062157	2013
Metabolism	Expanding the cyanuric acid hydrolase protein family to the fungal kingdom.	Dodge AG, Preiner CS, Wackett LP.	J Bacteriol	10.1128/jb.00965-13	2013
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Metabolism	Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii.	Manzoor S, Bongcam-Rudloff E, Schnurer A, Muller B.	PLoS One	10.1371/journal.pone.0166520	2016
Metabolism	Chromosomal Resistance to Metronidazole in Clostridioides difficile Can Be Mediated by Epistasis between Iron Homeostasis and Oxidoreductases.	Deshpande A, Wu X, Huo W, Palmer KL, Hurdle JG.	Antimicrob Agents Chemother	10.1128/aac.00415-20	2020
Metabolism	Genomic Insights into the Carbon and Energy Metabolism of a Thermophilic Deep-Sea Bacterium Deferribacter autotrophicus Revealed New Metabolic Traits in the Phylum Deferribacteres.	Slobodkin A, Slobodkina G, Allioux M, Alain K, Jebbar M, Shadrin V, Kublanov I, Toshchakov S, Bonch-Osmolovskaya E.	Genes (Basel)	10.3390/genes10110849	2019
Enzymology	Spectroscopy and DFT Calculations of a Flavo-diiron Enzyme Implicate New Diiron Site Structures.	Weitz AC, Giri N, Caranto JD, Kurtz DM, Bominaar EL, Hendrich MP.	J Am Chem Soc	10.1021/jacs.7b06546	2017
	Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria.	Manzoor S, Schnurer A, Bongcam-Rudloff E, Muller B.	Genes (Basel)	10.3390/genes9040225	2018
Metabolism	Bacterial selenocysteine synthase--structural and functional properties.	Tormay P, Wilting R, Lottspeich F, Mehta PK, Christen P, Bock A.	Eur J Biochem	10.1046/j.1432-1327.1998.2540655.x	1998
	Hydrocarbon bio-jet fuel from bioconversion of poplar biomass: life cycle assessment.	Budsberg E, Crawford JT, Morgan H, Chin WS, Bura R, Gustafson R.	Biotechnol Biofuels	10.1186/s13068-016-0582-2	2016
Enzymology	Two distinct gut microbial pathways contribute to meta-organismal production of phenylacetylglutamine with links to cardiovascular disease.	Zhu Y, Dwidar M, Nemet I, Buffa JA, Sangwan N, Li XS, Anderson JT, Romano KA, Fu X, Funabashi M, Wang Z, Keranahalli P, Battle S, Tittle AN, Hajjar AM, Gogonea V, Fischbach MA, DiDonato JA, Hazen SL.	Cell Host Microbe	10.1016/j.chom.2022.11.015	2023
Metabolism	Investigations of the efficient electrocatalytic interconversions of carbon dioxide and carbon monoxide by nickel-containing carbon monoxide dehydrogenases.	Wang VC, Ragsdale SW, Armstrong FA.	Met Ions Life Sci	10.1007/978-94-017-9269-1_4	2014
Metabolism	Carbon fixation and energy metabolisms of a subseafloor olivine biofilm.	Smith AR, Kieft B, Mueller R, Fisk MR, Mason OU, Popa R, Colwell FS.	ISME J	10.1038/s41396-019-0385-0	2019
Enzymology	"Candidatus Desulfobulbus rimicarensis," an Uncultivated Deltaproteobacterial Epibiont from the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata.	Jiang L, Liu X, Dong C, Huang Z, Cambon-Bonavita MA, Alain K, Gu L, Wang S, Shao Z.	Appl Environ Microbiol	10.1128/aem.02549-19	2020
Metabolism	Interactive Regulation of Formate Dehydrogenase during CO₂ Fixation in Gas-Fermenting Bacteria.	Zhang L, Liu Y, Zhao R, Zhang C, Jiang W, Gu Y.	mBio	10.1128/mbio.00650-20	2020
Metabolism	Fructose degradation in the haloarchaeon Haloferax volcanii involves a bacterial type phosphoenolpyruvate-dependent phosphotransferase system, fructose-1-phosphate kinase, and class II fructose-1,6-bisphosphate aldolase.	Pickl A, Johnsen U, Schonheit P.	J Bacteriol	10.1128/jb.00200-12	2012
Enzymology	Assessing Cofactor Usage in Pseudoclostridium thermosuccinogenes via Heterologous Expression of Central Metabolic Enzymes.	Koendjbiharie JG, Wevers K, van Kranenburg R.	Front Microbiol	10.3389/fmicb.2019.01162	2019
Metabolism	Coenzyme Engineering of a Hyperthermophilic 6-Phosphogluconate Dehydrogenase from NADP⁺ to NAD⁺ with Its Application to Biobatteries.	Chen H, Zhu Z, Huang R, Zhang YP.	Sci Rep	10.1038/srep36311	2016
Metabolism	The three-dimensional structure of the Moorella thermoacetica selenocysteine insertion sequence RNA hairpin and its interaction with the elongation factor SelB.	Beribisky AV, Tavares TJ, Amborski AN, Motamed M, Johnson AE, Mark TL, Johnson PE.	RNA	10.1261/rna.686607	2007
Enzymology	On the Natural History of Flavin-Based Electron Bifurcation.	Baymann F, Schoepp-Cothenet B, Duval S, Guiral M, Brugna M, Baffert C, Russell MJ, Nitschke W.	Front Microbiol	10.3389/fmicb.2018.01357	2018
	From an extremophilic community to an electroautotrophic production strain: identifying a novel Knallgas bacterium as cathodic biofilm biocatalyst.	Reiner JE, Geiger K, Hackbarth M, Fink M, Lapp CJ, Jung T, Dotsch A, Hugler M, Wagner M, Hille-Reichel A, Wilcke W, Kerzenmacher S, Horn H, Gescher J.	ISME J	10.1038/s41396-020-0595-5	2020
	The Vibrio vulnificus stressosome is an oxygen-sensor involved in regulating iron metabolism.	Heinz V, Jackel W, Kaltwasser S, Cutugno L, Bedrunka P, Graf A, Reder A, Michalik S, Dhople VM, Madej MG, Conway M, Lechner M, Riedel K, Bange G, Boyd A, Volker U, Lewis RJ, Marles-Wright J, Ziegler C, Pane-Farre J.	Commun Biol	10.1038/s42003-022-03548-w	2022
	Distribution, Evolution, Catalytic Mechanism, and Physiological Functions of the Flavin-Based Electron-Bifurcating NADH-Dependent Reduced Ferredoxin: NADP⁺ Oxidoreductase.	Liang J, Huang H, Wang S.	Front Microbiol	10.3389/fmicb.2019.00373	2019
Metabolism	Simultaneous fermentation of cellulose and current production with an enriched mixed culture of thermophilic bacteria in a microbial electrolysis cell.	Lusk BG, Colin A, Parameswaran P, Rittmann BE, Torres CI.	Microb Biotechnol	10.1111/1751-7915.12733	2018
	Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB.	Itoh Y, Sekine S, Yokoyama S.	Nucleic Acids Res	10.1093/nar/gkv833	2015
Metabolism	Dinuclear nickel complexes modeling the structure and function of the acetyl CoA synthase active site.	Ito M, Kotera M, Matsumoto T, Tatsumi K.	Proc Natl Acad Sci U S A	10.1073/pnas.0900433106	2009
	The bridge-region of the Ku superfamily is an atypical zinc ribbon domain.	Krishna SS, Aravind L.	J Struct Biol	10.1016/j.jsb.2010.05.011	2010
Metabolism	A unified electrocatalytic description of the action of inhibitors of nickel carbon monoxide dehydrogenase.	Wang VC, Can M, Pierce E, Ragsdale SW, Armstrong FA.	J Am Chem Soc	10.1021/ja308493k	2013
Enzymology	Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases.	Muller AL, Kjeldsen KU, Rattei T, Pester M, Loy A.	ISME J	10.1038/ismej.2014.208	2015
Enzymology	Adaptations to a Loss-of-Function Mutation in the Betaproteobacterium Aromatoleum aromaticum: Recruitment of Alternative Enzymes for Anaerobic Phenylalanine Degradation.	Schmitt G, Arndt F, Kahnt J, Heider J.	J Bacteriol	10.1128/jb.00383-17	2017
Metabolism	Investigation into Host Selection of the Cecal Acetogen Population in Rabbits after Weaning.	Yang C, Mi L, Hu X, Liu J, Wang J.	PLoS One	10.1371/journal.pone.0158768	2016
Metabolism	First insights into the syntrophic acetate-oxidizing bacteria--a genetic study.	Muller B, Sun L, Schnurer A.	Microbiologyopen	10.1002/mbo3.50	2013
	Synthetic Formatotrophs for One-Carbon Biorefinery.	Bang J, Ahn JH, Lee JA, Hwang CH, Kim GB, Lee J, Lee SY.	Adv Sci (Weinh)	10.1002/advs.202100199	2021
Enzymology	The Beta Subunit of Non-bifurcating NADH-Dependent [FeFe]-Hydrogenases Differs From Those of Multimeric Electron-Bifurcating [FeFe]-Hydrogenases.	Losey NA, Poudel S, Boyd ES, McInerney MJ.	Front Microbiol	10.3389/fmicb.2020.01109	2020
Metabolism	Clostridium ljungdahlii represents a microbial production platform based on syngas.	Kopke M, Held C, Hujer S, Liesegang H, Wiezer A, Wollherr A, Ehrenreich A, Liebl W, Gottschalk G, Durre P.	Proc Natl Acad Sci U S A	10.1073/pnas.1004716107	2010
	Structure-guided discovery of new deaminase enzymes.	Hitchcock DS, Fan H, Kim J, Vetting M, Hillerich B, Seidel RD, Almo SC, Shoichet BK, Sali A, Raushel FM.	J Am Chem Soc	10.1021/ja4066078	2013
Metabolism	Metabolic engineering of Escherichia coli for the synthesis of polyhydroxyalkanoates using acetate as a main carbon source.	Chen J, Li W, Zhang ZZ, Tan TW, Li ZJ.	Microb Cell Fact	10.1186/s12934-018-0949-0	2018
	Residue Network Involved in the Allosteric Regulation of Cystathionine beta-Synthase Domain-Containing Pyrophosphatase by Adenine Nucleotides.	Anashkin VA, Salminen A, Osipova E, Kurilova SA, Deltsov ID, Lahti R, Baykov AA.	ACS Omega	10.1021/acsomega.9b01879	2019
	Growth and Product Formation of Clostridium ljungdahlii in Presence of Cyanide.	Oswald F, Zwick M, Omar O, Hotz EN, Neumann A.	Front Microbiol	10.3389/fmicb.2018.01213	2018
	Alkene hydrogenation activity of enoate reductases for an environmentally benign biosynthesis of adipic acid.	Joo JC, Khusnutdinova AN, Flick R, Kim T, Bornscheuer UT, Yakunin AF, Mahadevan R.	Chem Sci	10.1039/c6sc02842j	2017
	Immobilization of functional nano-objects in living engineered bacterial biofilms for catalytic applications.	Wang X, Pu J, Liu Y, Ba F, Cui M, Li K, Xie Y, Nie Y, Mi Q, Li T, Liu L, Zhu M, Zhong C.	Natl Sci Rev	10.1093/nsr/nwz104	2019
Enzymology	Structural insight into metallocofactor maturation in carbon monoxide dehydrogenase.	Wittenborn EC, Cohen SE, Merrouch M, Leger C, Fourmond V, Dementin S, Drennan CL.	J Biol Chem	10.1074/jbc.ra119.009610	2019
Metabolism	The Properties of 5-Methyltetrahydrofolate Dehydrogenase (MetF1) and Its Role in the Tetrahydrofolate-Dependent Dicamba Demethylation System in Rhizorhabdus dicambivorans Ndbn-20.	Yao S, Chen L, Yang Z, Yao L, Zhu J, Qiu J, Wang G, He J.	J Bacteriol	10.1128/jb.00096-19	2019
Metabolism	The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans.	Sanchez-Andrea I, Guedes IA, Hornung B, Boeren S, Lawson CE, Sousa DZ, Bar-Even A, Claassens NJ, Stams AJM.	Nat Commun	10.1038/s41467-020-18906-7	2020
	Long-Term Biogas Production from Glycolate by Diverse and Highly Dynamic Communities.	Gunther S, Becker D, Hubschmann T, Reinert S, Kleinsteuber S, Muller S, Wilhelm C.	Microorganisms	10.3390/microorganisms6040103	2018
	Production of alkanes from CO₂ by engineered bacteria.	Lehtinen T, Virtanen H, Santala S, Santala V.	Biotechnol Biofuels	10.1186/s13068-018-1229-2	2018
	Production routes to bio-acetic acid: life cycle assessment.	Budsberg E, Morales-Vera R, Crawford JT, Bura R, Gustafson R.	Biotechnol Biofuels	10.1186/s13068-020-01784-y	2020
Metabolism	Microbial and Genetic Resources for Cobalamin (Vitamin B12) Biosynthesis: From Ecosystems to Industrial Biotechnology.	Balabanova L, Averianova L, Marchenok M, Son O, Tekutyeva L.	Int J Mol Sci	10.3390/ijms22094522	2021
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Metabolism	Heterotrimeric NADH-oxidizing methylenetetrahydrofolate reductase from the acetogenic bacterium Acetobacterium woodii.	Bertsch J, Oppinger C, Hess V, Langer JD, Muller V.	J Bacteriol	10.1128/jb.00048-15	2015
	Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575).	Spring S, Lapidus A, Schroder M, Gleim D, Sims D, Meincke L, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Brettin T, Detter JC, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Han C.	Stand Genomic Sci	10.4056/sigs.39508	2009
Biotechnology	An insight into the bioelectrochemical photoreduction of CO₂ to value-added chemicals.	Gupta P, Noori MT, Nunez AE, Verma N.	iScience	10.1016/j.isci.2021.102294	2021
Enzymology	X-ray crystallography-based structural elucidation of enzyme-bound intermediates along the 1-deoxy-d-xylulose 5-phosphate synthase reaction coordinate.	Chen PY, DeColli AA, Freel Meyers CL, Drennan CL.	J Biol Chem	10.1074/jbc.ra119.009321	2019
Metabolism	Kinetics of Enzymatic Mercury Methylation at Nanomolar Concentrations Catalyzed by HgcAB.	Date SS, Parks JM, Rush KW, Wall JD, Ragsdale SW, Johs A.	Appl Environ Microbiol	10.1128/aem.00438-19	2019
Enzymology	Cystathionine beta-synthase (CBS) domains confer multiple forms of Mg2+-dependent cooperativity to family II pyrophosphatases.	Salminen A, Anashkin VA, Lahti M, Tuominen HK, Lahti R, Baykov AA.	J Biol Chem	10.1074/jbc.m114.589473	2014
Metabolism	A structural phylogeny for understanding 2-oxoacid oxidoreductase function.	Gibson MI, Chen PY, Drennan CL.	Curr Opin Struct Biol	10.1016/j.sbi.2016.05.011	2016
Metabolism	Crystallization and preliminary X-ray analysis of the mRNA-binding domain of elongation factor SelB from Escherichia coli in complex with RNA.	Soler N, Fourmy D, Yoshizawa S.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s174430910701723x	2007
Enzymology	Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes.	Adam PS, Borrel G, Gribaldo S.	Proc Natl Acad Sci U S A	10.1073/pnas.1716667115	2018
Enzymology	Phylogenetic and amino acid conservation analyses of bacterial L-aspartate-alpha-decarboxylase and of its zymogen-maturation protein reveal a putative interaction domain.	Stuecker TN, Bramhacharya S, Hodge-Hanson KM, Suen G, Escalante-Semerena JC.	BMC Res Notes	10.1186/s13104-015-1314-6	2015
Metabolism	A Genetic System for the Thermophilic Acetogenic Bacterium Thermoanaerobacter kivui.	Basen M, Geiger I, Henke L, Muller V.	Appl Environ Microbiol	10.1128/aem.02210-17	2018
	Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).	Anderson I, Held B, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Brambilla EM, Rohde M, Spring S, Goker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.	Stand Genomic Sci	10.4056/sigs.2746047	2012
	Enhanced microbial electrosynthesis by using defined co-cultures.	Deutzmann JS, Spormann AM.	ISME J	10.1038/ismej.2016.149	2017
	Investigations by Protein Film Electrochemistry of Alternative Reactions of Nickel-Containing Carbon Monoxide Dehydrogenase.	Wang VC, Islam ST, Can M, Ragsdale SW, Armstrong FA.	J Phys Chem B	10.1021/acs.jpcb.5b03098	2015
Phylogeny	Evaluation of bacterial diversity recovered from petroleum samples using different physical matrices.	Dellagnezze BM, Vasconcellos SP, Melo IS, Santos Neto EV, Oliveira VM.	Braz J Microbiol	10.1016/j.bjm.2016.04.004	2016
	CO₂ to succinic acid - Estimating the potential of biocatalytic routes.	Liebal UW, Blank LM, Ebert BE.	Metab Eng Commun	10.1016/j.mec.2018.e00075	2018
	Nitrogen Fertilizer Amendment Alter the Bacterial Community Structure in the Rhizosphere of Rice (Oryza sativa L.) and Improve Crop Yield.	Chen J, Arafat Y, Ud Din I, Yang B, Zhou L, Wang J, Letuma P, Wu H, Qin X, Wu L, Lin S, Zhang Z, Lin W.	Front Microbiol	10.3389/fmicb.2019.02623	2019
	Genome analysis of Desulfotomaculum kuznetsovii strain 17(T) reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI(T).	Visser M, Worm P, Muyzer G, Pereira IA, Schaap PJ, Plugge CM, Kuever J, Parshina SN, Nazina TN, Ivanova AE, Bernier-Latmani R, Goodwin LA, Kyrpides NC, Woyke T, Chain P, Davenport KW, Spring S, Klenk HP, Stams AJ.	Stand Genomic Sci	10.4056/sigs.3627141	2013
	Spore-Forming Thermophilic Bacterium within Artificial Meteorite Survives Entry into the Earth's Atmosphere on FOTON-M4 Satellite Landing Module.	Slobodkin A, Gavrilov S, Ionov V, Iliyin V.	PLoS One	10.1371/journal.pone.0132611	2015
Metabolism	Alternative Pathways of Acetogenic Ethanol and Methanol Degradation in the Thermophilic Anaerobe Thermacetogenium phaeum.	Keller A, Schink B, Muller N.	Front Microbiol	10.3389/fmicb.2019.00423	2019
	Crystallographic snapshots of cyanide- and water-bound C-clusters from bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase.	Kung Y, Doukov TI, Seravalli J, Ragsdale SW, Drennan CL.	Biochemistry	10.1021/bi900574h	2009
Enzymology	A natural fusion of flavodiiron, rubredoxin, and rubredoxin oxidoreductase domains is a self-sufficient water-forming oxidase of Trichomonas vaginalis.	Abdulaziz EN, Bell TA, Rashid B, Heacock ML, Begic T, Skinner OS, Yaseen MA, Chao LH, Mootha VK, Pierik AJ, Cracan V.	J Biol Chem	10.1016/j.jbc.2022.102210	2022
Phylogeny	Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity.	Sant'Anna FH, Lebedinsky AV, Sokolova TG, Robb FT, Gonzalez JM.	BMC Genomics	10.1186/s12864-015-1955-9	2015
Enzymology	Investigations of two bidirectional carbon monoxide dehydrogenases from Carboxydothermus hydrogenoformans by protein film electrochemistry.	Wang VC, Ragsdale SW, Armstrong FA.	Chembiochem	10.1002/cbic.201300270	2013
Enzymology	Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica.	Volbeda A, Darnault C, Tan X, Lindahl PA, Fontecilla-Camps JC.	Biochemistry	10.1021/bi9003952	2009
Enzymology	Acceleration of cellodextrin phosphorolysis for bioelectricity generation from cellulosic biomass by integrating a synthetic two-enzyme complex into an in vitro synthetic enzymatic biosystem.	Meng D, Wu R, Wang J, Zhu Z, You C.	Biotechnol Biofuels	10.1186/s13068-019-1607-4	2019
Enzymology	"PP2C7s", Genes Most Highly Elaborated in Photosynthetic Organisms, Reveal the Bacterial Origin and Stepwise Evolution of PPM/PP2C Protein Phosphatases.	Kerk D, Silver D, Uhrig RG, Moorhead GB.	PLoS One	10.1371/journal.pone.0132863	2015
	Lignocellulosic saccharification by a newly isolated bacterium, Ruminiclostridium thermocellum M3 and cellular cellulase activities for high ratio of glucose to cellobiose.	Sheng T, Zhao L, Gao LF, Liu WZ, Cui MH, Guo ZC, Ma XD, Ho SH, Wang AJ.	Biotechnol Biofuels	10.1186/s13068-016-0585-z	2016
Enzymology	Characterization of a three-component vanillate O-demethylase from Moorella thermoacetica.	Naidu D, Ragsdale SW.	J Bacteriol	10.1128/jb.183.11.3276-3281.2001	2001
Enzymology	A reverse TCA cycle 2-oxoacid:ferredoxin oxidoreductase that makes C-C bonds from CO₂.	Chen PY, Li B, Drennan CL, Elliott SJ.	Joule	10.1016/j.joule.2018.12.006	2019
Metabolism	Ethanol and acetic acid production from carbon monoxide in a Clostridium strain in batch and continuous gas-fed bioreactors.	Abubackar HN, Veiga MC, Kennes C.	Int J Environ Res Public Health	10.3390/ijerph120101029	2015
Genetics	Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes.	Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW.	Microb Ecol	10.1007/s00248-018-1155-7	2018
Metabolism	Effect of Start-Up Strategies and Electrode Materials on Carbon Dioxide Reduction on Biocathodes.	Saheb-Alam S, Singh A, Hermansson M, Persson F, Schnurer A, Wilen BM, Modin O.	Appl Environ Microbiol	10.1128/aem.02242-17	2018
Metabolism	Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture.	Marozava S, Mouttaki H, Muller H, Laban NA, Probst AJ, Meckenstock RU.	Biodegradation	10.1007/s10532-017-9811-z	2018
Metabolism	Energy conservation in acetogenic bacteria.	Muller V.	Appl Environ Microbiol	10.1128/aem.69.11.6345-6353.2003	2003
Proteome	Absolute Proteome Quantification in the Gas-Fermenting Acetogen Clostridium autoethanogenum.	Valgepea K, Talbo G, Takemori N, Takemori A, Ludwig C, Mahamkali V, Mueller AP, Tappel R, Kopke M, Simpson SD, Nielsen LK, Marcellin E.	mSystems	10.1128/msystems.00026-22	2022
Metabolism	Evidence of mixotrophic carbon-capture by n-butanol-producer Clostridium beijerinckii.	Sandoval-Espinola WJ, Chinn MS, Thon MR, Bruno-Barcena JM.	Sci Rep	10.1038/s41598-017-12962-8	2017
	Volatile Fatty Acids as Carbon Sources for Polyhydroxyalkanoates Production.	Szacherska K, Oleskowicz-Popiel P, Ciesielski S, Mozejko-Ciesielska J.	Polymers (Basel)	10.3390/polym13030321	2021
Metabolism	Syntrophomonas wolfei Uses an NADH-Dependent, Ferredoxin-Independent [FeFe]-Hydrogenase To Reoxidize NADH.	Losey NA, Mus F, Peters JW, Le HM, McInerney MJ.	Appl Environ Microbiol	10.1128/aem.01335-17	2017
Metabolism	Cytochrome bd oxidase, oxidative stress, and dioxygen tolerance of the strictly anaerobic bacterium Moorella thermoacetica.	Das A, Silaghi-Dumitrescu R, Ljungdahl LG, Kurtz DM.	J Bacteriol	10.1128/jb.187.6.2020-2029.2005	2005
	Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB.	Selmer M, Su XD.	EMBO J	10.1093/emboj/cdf408	2002
Enzymology	Protein engineering of oxidoreductases utilizing nicotinamide-based coenzymes, with applications in synthetic biology.	You C, Huang R, Wei X, Zhu Z, Zhang YP.	Synth Syst Biotechnol	10.1016/j.synbio.2017.09.002	2017
	Proteomics Reveal Enhanced Oxidative Stress Responses and Metabolic Adaptation in Acidithiobacillus ferrooxidans Biofilm Cells on Pyrite.	Bellenberg S, Huynh D, Poetsch A, Sand W, Vera M.	Front Microbiol	10.3389/fmicb.2019.00592	2019
Metabolism	Visualizing molecular juggling within a B12-dependent methyltransferase complex.	Kung Y, Ando N, Doukov TI, Blasiak LC, Bender G, Seravalli J, Ragsdale SW, Drennan CL.	Nature	10.1038/nature10916	2012
	A TetR-Family Protein (CAETHG_0459) Activates Transcription From a New Promoter Motif Associated With Essential Genes for Autotrophic Growth in Acetogens.	de Souza Pinto Lemgruber R, Valgepea K, Gonzalez Garcia RA, de Bakker C, Palfreyman RW, Tappel R, Kopke M, Simpson SD, Nielsen LK, Marcellin E.	Front Microbiol	10.3389/fmicb.2019.02549	2019
Enzymology	CO and CN- syntheses by [FeFe]-hydrogenase maturase HydG are catalytically differentiated events.	Pagnier A, Martin L, Zeppieri L, Nicolet Y, Fontecilla-Camps JC.	Proc Natl Acad Sci U S A	10.1073/pnas.1515842113	2016
Genetics	Genome Analysis of Endomicrobium proavitum Suggests Loss and Gain of Relevant Functions during the Evolution of Intracellular Symbionts.	Zheng H, Dietrich C, Brune A.	Appl Environ Microbiol	10.1128/aem.00656-17	2017
Metabolism	Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence.	Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A.	BMC Genomics	10.1186/1471-2164-11-555	2010
Genetics	Re-evaluation of Diadenosine Tetraphosphate (Ap₄A) From a Stress Metabolite to Bona Fide Secondary Messenger.	Ferguson F, McLennan AG, Urbaniak MD, Jones NJ, Copeland NA.	Front Mol Biosci	10.3389/fmolb.2020.606807	2020
Metabolism	Evidence that ferredoxin interfaces with an internal redox shuttle in Acetyl-CoA synthase during reductive activation and catalysis.	Bender G, Ragsdale SW.	Biochemistry	10.1021/bi101511r	2011
Enzymology	Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases.	Inoue M, Nakamoto I, Omae K, Oguro T, Ogata H, Yoshida T, Sako Y.	Front Microbiol	10.3389/fmicb.2018.03353	2018
Genetics	Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.	Kublanov IV, Sigalova OM, Gavrilov SN, Lebedinsky AV, Rinke C, Kovaleva O, Chernyh NA, Ivanova N, Daum C, Reddy TB, Klenk HP, Spring S, Goker M, Reva ON, Miroshnichenko ML, Kyrpides NC, Woyke T, Gelfand MS, Bonch-Osmolovskaya EA.	Front Microbiol	10.3389/fmicb.2017.00195	2017
Metabolism	Anaerobic biosynthesis of the lower ligand of vitamin B12.	Hazra AB, Han AW, Mehta AP, Mok KC, Osadchiy V, Begley TP, Taga ME.	Proc Natl Acad Sci U S A	10.1073/pnas.1509132112	2015
	Challenges of ligand identification for riboswitch candidates.	Meyer MM, Hammond MC, Salinas Y, Roth A, Sudarsan N, Breaker RR.	RNA Biol	10.4161/rna.8.1.13865	2011
Metabolism	Tolerance and metabolic response of acetogenic bacteria toward oxygen.	Karnholz A, Kusel K, Gossner A, Schramm A, Drake HL.	Appl Environ Microbiol	10.1128/aem.68.2.1005-1009.2002	2002
Metabolism	Diverse Energy-Conserving Pathways in Clostridium difficile: Growth in the Absence of Amino Acid Stickland Acceptors and the Role of the Wood-Ljungdahl Pathway.	Gencic S, Grahame DA.	J Bacteriol	10.1128/jb.00233-20	2020
Metabolism	How the Anaerobic Enteropathogen Clostridioides difficile Tolerates Low O₂ Tensions.	Kint N, Alves Feliciano C, Martins MC, Morvan C, Fernandes SF, Folgosa F, Dupuy B, Texeira M, Martin-Verstraete I.	mBio	10.1128/mbio.01559-20	2020
Metabolism	CO Metabolism in the Thermophilic Acetogen Thermoanaerobacter kivui.	Weghoff MC, Muller V.	Appl Environ Microbiol	10.1128/aem.00122-16	2016
	Spectroscopic studies of the corrinoid/iron-sulfur protein from Moorella thermoacetica.	Stich TA, Seravalli J, Venkateshrao S, Spiro TG, Ragsdale SW, Brunold TC.	J Am Chem Soc	10.1021/ja054690o	2006
Metabolism	Tetrachloromethane-Degrading Bacterial Enrichment Cultures and Isolates from a Contaminated Aquifer.	Penny C, Gruffaz C, Nadalig T, Cauchie HM, Vuilleumier S, Bringel F.	Microorganisms	10.3390/microorganisms3030327	2015
	Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea.	Ravi K, Garcia-Hidalgo J, Nobel M, Gorwa-Grauslund MF, Liden G.	AMB Express	10.1186/s13568-018-0563-x	2018
Metabolism	Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth.	Song Y, Shin J, Jin S, Lee JK, Kim DR, Kim SC, Cho S, Cho BK.	BMC Genomics	10.1186/s12864-018-5238-0	2018
Metabolism	Two surfaces of a conserved interdomain linker differentially affect output from the RST sensing module of the Bacillus subtilis stressosome.	Gaidenko TA, Bie X, Baldwin EP, Price CW.	J Bacteriol	10.1128/jb.00583-12	2012
Enzymology	Use of ferrous iron by metallo-beta-lactamases.	Cahill ST, Tarhonskaya H, Rydzik AM, Flashman E, McDonough MA, Schofield CJ, Brem J.	J Inorg Biochem	10.1016/j.jinorgbio.2016.07.013	2016
Enzymology	Characterization of an O-demethylase of Desulfitobacterium hafniense DCB-2.	Studenik S, Vogel M, Diekert G.	J Bacteriol	10.1128/jb.00146-12	2012
Stress	A Highly Thermostable Kanamycin Resistance Marker Expands the Tool Kit for Genetic Manipulation of Caldicellulosiruptor bescii.	Lipscomb GL, Conway JM, Blumer-Schuette SE, Kelly RM, Adams MWW.	Appl Environ Microbiol	10.1128/aem.00570-16	2016
Metabolism	Energy Conservation Associated with Ethanol Formation from H2 and CO2 in Clostridium autoethanogenum Involving Electron Bifurcation.	Mock J, Zheng Y, Mueller AP, Ly S, Tran L, Segovia S, Nagaraju S, Kopke M, Durre P, Thauer RK.	J Bacteriol	10.1128/jb.00399-15	2015
	Redox dependent metabolic shift in Clostridium autoethanogenum by extracellular electron supply.	Kracke F, Virdis B, Bernhardt PV, Rabaey K, Kromer JO.	Biotechnol Biofuels	10.1186/s13068-016-0663-2	2016
Metabolism	Functional copper at the acetyl-CoA synthase active site.	Seravalli J, Gu W, Tam A, Strauss E, Begley TP, Cramer SP, Ragsdale SW.	Proc Natl Acad Sci U S A	10.1073/pnas.0436720100	2003
	Xenon in and at the end of the tunnel of bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase.	Doukov TI, Blasiak LC, Seravalli J, Ragsdale SW, Drennan CL.	Biochemistry	10.1021/bi702386t	2008
Enzymology	Recombinant expression and characterisation of the oxygen-sensitive 2-enoate reductase from Clostridium sporogenes.	Mordaka PM, Hall SJ, Minton N, Stephens G.	Microbiology (Reading)	10.1099/mic.0.000568	2018
	Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion.	Peters DL, McCutcheon JG, Stothard P, Dennis JJ.	BMC Genomics	10.1186/s12864-019-5674-5	2019
Metabolism	Evidence for widespread gene control function by the ydaO riboswitch candidate.	Block KF, Hammond MC, Breaker RR.	J Bacteriol	10.1128/jb.00450-10	2010
Metabolism	Identification and characterization of oxalate oxidoreductase, a novel thiamine pyrophosphate-dependent 2-oxoacid oxidoreductase that enables anaerobic growth on oxalate.	Pierce E, Becker DF, Ragsdale SW.	J Biol Chem	10.1074/jbc.m110.155739	2010
Metabolism	Function of Ech hydrogenase in ferredoxin-dependent, membrane-bound electron transport in Methanosarcina mazei.	Welte C, Kallnik V, Grapp M, Bender G, Ragsdale S, Deppenmeier U.	J Bacteriol	10.1128/jb.01307-09	2010
Enzymology	The ether-cleaving methyltransferase system of the strict anaerobe Acetobacterium dehalogenans: analysis and expression of the encoding genes.	Schilhabel A, Studenik S, Vodisch M, Kreher S, Schlott B, Pierik AJ, Diekert G.	J Bacteriol	10.1128/jb.01104-08	2009
Metabolism	Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.	Wirth R, Kovacs E, Maroti G, Bagi Z, Rakhely G, Kovacs KL.	Biotechnol Biofuels	10.1186/1754-6834-5-41	2012
Metabolism	Inability of Prevotella bryantii to form a functional Shine-Dalgarno interaction reflects unique evolution of ribosome binding sites in Bacteroidetes.	Accetto T, Avgustin G.	PLoS One	10.1371/journal.pone.0022914	2011
Metabolism	Converting carbon dioxide to butyrate with an engineered strain of Clostridium ljungdahlii.	Ueki T, Nevin KP, Woodard TL, Lovley DR.	mBio	10.1128/mbio.01636-14	2014
Metabolism	A Tetrahydrofolate-Dependent Methyltransferase Catalyzing the Demethylation of Dicamba in Sphingomonas sp. Strain Ndbn-20.	Yao L, Yu LL, Zhang JJ, Xie XT, Tao Q, Yan X, Hong Q, Qiu JG, He J, Ding DR.	Appl Environ Microbiol	10.1128/aem.01201-16	2016
Metabolism	CO Metabolism in the Acetogen Acetobacterium woodii.	Bertsch J, Muller V.	Appl Environ Microbiol	10.1128/aem.01772-15	2015
	Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea.	Murali R, Yu H, Speth DR, Wu F, Metcalfe KS, Cremiere A, Laso-Perez R, Malmstrom RR, Goudeau D, Woyke T, Hatzenpichler R, Chadwick GL, Connon SA, Orphan VJ.	PLoS Biol	10.1371/journal.pbio.3002292	2023
Enzymology	The Rnf complex of Clostridium ljungdahlii is a proton-translocating ferredoxin:NAD+ oxidoreductase essential for autotrophic growth.	Tremblay PL, Zhang T, Dar SA, Leang C, Lovley DR.	mBio	10.1128/mbio.00406-12	2012
	Infrared and EPR spectroscopic characterization of a Ni(I) species formed by photolysis of a catalytically competent Ni(I)-CO intermediate in the acetyl-CoA synthase reaction.	Bender G, Stich TA, Yan L, Britt RD, Cramer SP, Ragsdale SW.	Biochemistry	10.1021/bi1010128	2010
Metabolism	Structure of the cobalamin-binding protein of a putative O-demethylase from Desulfitobacterium hafniense DCB-2.	Sjuts H, Dunstan MS, Fisher K, Leys D.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444913011323	2013
Metabolism	Carboxydotrophic growth of Geobacter sulfurreducens.	Geelhoed JS, Henstra AM, Stams AJ.	Appl Microbiol Biotechnol	10.1007/s00253-015-7033-z	2016
	Microbial community functional structures in wastewater treatment plants as characterized by GeoChip.	Wang X, Xia Y, Wen X, Yang Y, Zhou J.	PLoS One	10.1371/journal.pone.0093422	2014
Metabolism	The physiological effect of heavy metals and volatile fatty acids on Methanococcus maripaludis S2.	Abdel Azim A, Rittmann SKR, Fino D, Bochmann G.	Biotechnol Biofuels	10.1186/s13068-018-1302-x	2018
Enzymology	Progressive degradation of crude oil n-alkanes coupled to methane production under mesophilic and thermophilic conditions.	Cheng L, Shi S, Li Q, Chen J, Zhang H, Lu Y.	PLoS One	10.1371/journal.pone.0113253	2014
Metabolism	A Ferredoxin- and F420H2-Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea.	Yan Z, Wang M, Ferry JG.	mBio	10.1128/mbio.02285-16	2017
	Single gene insertion drives bioalcohol production by a thermophilic archaeon.	Basen M, Schut GJ, Nguyen DM, Lipscomb GL, Benn RA, Prybol CJ, Vaccaro BJ, Poole FL, Kelly RM, Adams MW, Adams MW.	Proc Natl Acad Sci U S A	10.1073/pnas.1413789111	2014
Metabolism	Synthesis of Heterologous Mevalonic Acid Pathway Enzymes in Clostridium ljungdahlii for the Conversion of Fructose and of Syngas to Mevalonate and Isoprene.	Diner BA, Fan J, Scotcher MC, Wells DH, Whited GM.	Appl Environ Microbiol	10.1128/aem.01723-17	2018
	Electron transport phosphorylation in rumen butyrivibrios: unprecedented ATP yield for glucose fermentation to butyrate.	Hackmann TJ, Firkins JL.	Front Microbiol	10.3389/fmicb.2015.00622	2015
Enzymology	An electron-bifurcating caffeyl-CoA reductase.	Bertsch J, Parthasarathy A, Parthasarathy A, Buckel W, Muller V.	J Biol Chem	10.1074/jbc.m112.444919	2013
	Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD⁺ (Rnf) as Electron Acceptors: A Historical Review.	Buckel W, Thauer RK.	Front Microbiol	10.3389/fmicb.2018.00401	2018
Enzymology	Biocatalysis for the application of CO2 as a chemical feedstock.	Alissandratos A, Easton CJ.	Beilstein J Org Chem	10.3762/bjoc.11.259	2015
Metabolism	Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.	Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.	Microb Cell Fact	10.1186/1475-2859-12-118	2013
Metabolism	Flavodiiron proteins in oxygenic photosynthetic organisms: photoprotection of photosystem II by Flv2 and Flv4 in Synechocystis sp. PCC 6803.	Zhang P, Allahverdiyeva Y, Eisenhut M, Aro EM.	PLoS One	10.1371/journal.pone.0005331	2009
	Nanobiohybrids: Materials approaches for bioaugmentation.	Guo Z, Richardson JJ, Kong B, Liang K.	Sci Adv	10.1126/sciadv.aaz0330	2020
Genetics	The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).	Pierce E, Xie G, Barabote RD, Saunders E, Han CS, Detter JC, Richardson P, Brettin TS, Das A, Ljungdahl LG, Ragsdale SW.	Environ Microbiol	10.1111/j.1462-2920.2008.01679.x	2008
	Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution.	Rigden DJ, Galperin MY.	Bioinformatics	10.1093/bioinformatics/btn314	2008
Enzymology	Carbonic anhydrase in Acetobacterium woodii and other acetogenic bacteria.	Braus-Stromeyer SA, Schnappauf G, Braus GH, Gossner AS, Drake HL.	J Bacteriol	10.1128/jb.179.22.7197-7200.1997	1997
Metabolism	Prokaryotic phylogenies inferred from whole-genome sequence and annotation data.	Du W, Cao Z, Wang Y, Sun Y, Blanzieri E, Liang Y.	Biomed Res Int	10.1155/2013/409062	2013
Metabolism	Heterologous Expression of the Clostridium carboxidivorans CO Dehydrogenase Alone or Together with the Acetyl Coenzyme A Synthase Enables both Reduction of CO₂ and Oxidation of CO by Clostridium acetobutylicum.	Carlson ED, Papoutsakis ET.	Appl Environ Microbiol	10.1128/aem.00829-17	2017
	Adaptation of Akkermansia muciniphila to the Oxic-Anoxic Interface of the Mucus Layer.	Ouwerkerk JP, van der Ark KCH, Davids M, Claassens NJ, Finestra TR, de Vos WM, Belzer C.	Appl Environ Microbiol	10.1128/aem.01641-16	2016
Metabolism	The SiaABC threonine phosphorylation pathway controls biofilm formation in response to carbon availability in Pseudomonas aeruginosa.	Poh WH, Lin J, Colley B, Muller N, Goh BC, Schleheck D, El Sahili A, Marquardt A, Liang Y, Kjelleberg S, Lescar J, Rice SA, Klebensberger J.	PLoS One	10.1371/journal.pone.0241019	2020
	Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics.	Llorens-Mares T, Yooseph S, Goll J, Hoffman J, Vila-Costa M, Borrego CM, Dupont CL, Casamayor EO.	ISME J	10.1038/ismej.2014.254	2015
Metabolism	Genomic analysis of carbon monoxide utilization and butanol production by Clostridium carboxidivorans strain P7.	Bruant G, Levesque MJ, Peter C, Guiot SR, Masson L.	PLoS One	10.1371/journal.pone.0013033	2010
	EPR spectroscopic and computational characterization of the hydroxyethylidene-thiamine pyrophosphate radical intermediate of pyruvate:ferredoxin oxidoreductase.	Mansoorabadi SO, Seravalli J, Furdui C, Krymov V, Gerfen GJ, Begley TP, Melnick J, Ragsdale SW, Reed GH.	Biochemistry	10.1021/bi0602516	2006
Genetics	Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments.	Timmers PHA, Vavourakis CD, Kleerebezem R, Damste JSS, Muyzer G, Stams AJM, Sorokin DY, Plugge CM.	Front Microbiol	10.3389/fmicb.2018.03039	2018
Phylogeny	Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.	Nobu MK, Dodsworth JA, Murugapiran SK, Rinke C, Gies EA, Webster G, Schwientek P, Kille P, Parkes RJ, Sass H, Jorgensen BB, Weightman AJ, Liu WT, Hallam SJ, Tsiamis G, Woyke T, Hedlund BP.	ISME J	10.1038/ismej.2015.97	2016
Proteome	Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type.	Heyer R, Benndorf D, Kohrs F, De Vrieze J, Boon N, Hoffmann M, Rapp E, Schluter A, Sczyrba A, Reichl U.	Biotechnol Biofuels	10.1186/s13068-016-0572-4	2016
Metabolism	AcsF Catalyzes the ATP-dependent Insertion of Nickel into the Ni,Ni-[4Fe4S] Cluster of Acetyl-CoA Synthase.	Gregg CM, Goetzl S, Jeoung JH, Dobbek H.	J Biol Chem	10.1074/jbc.m116.731638	2016
Enzymology	A detoxifying oxygen reductase in the anaerobic protozoan Entamoeba histolytica.	Vicente JB, Vicente JB, Tran V, Pinto L, Teixeira M, Singh U.	Eukaryot Cell	10.1128/ec.00149-12	2012
	Genome-scale analysis of Acetobacterium bakii reveals the cold adaptation of psychrotolerant acetogens by post-transcriptional regulation.	Shin J, Song Y, Jin S, Lee JK, Kim DR, Kim SC, Cho S, Cho BK.	RNA	10.1261/rna.068239.118	2018
	Analysis of microbial communities in the oil reservoir subjected to CO2-flooding by using functional genes as molecular biomarkers for microbial CO2 sequestration.	Liu JF, Sun XB, Yang GC, Mbadinga SM, Gu JD, Mu BZ.	Front Microbiol	10.3389/fmicb.2015.00236	2015
Metabolism	An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.	Poehlein A, Schmidt S, Kaster AK, Goenrich M, Vollmers J, Thurmer A, Bertsch J, Schuchmann K, Voigt B, Hecker M, Daniel R, Thauer RK, Gottschalk G, Muller V.	PLoS One	10.1371/journal.pone.0033439	2012
Metabolism	The SiaA/B/C/D signaling network regulates biofilm formation in Pseudomonas aeruginosa.	Chen G, Gan J, Yang C, Zuo Y, Peng J, Li M, Huo W, Xie Y, Zhang Y, Wang T, Deng X, Liang H.	EMBO J	10.15252/embj.2019103412	2020
Metabolism	A functional Ni-Ni-[4Fe-4S] cluster in the monomeric acetyl-CoA synthase from Carboxydothermus hydrogenoformans.	Svetlitchnyi V, Dobbek H, Meyer-Klaucke W, Meins T, Thiele B, Romer P, Huber R, Meyer O.	Proc Natl Acad Sci U S A	10.1073/pnas.0304262101	2004
Metabolism	Nonacetogenic growth of the acetogen Acetobacterium woodii on 1,2-propanediol.	Schuchmann K, Schmidt S, Martinez Lopez A, Kaberline C, Kuhns M, Lorenzen W, Bode HB, Joos F, Muller V.	J Bacteriol	10.1128/jb.02383-14	2015
Metabolism	Acetate activation in Methanosaeta thermophila: characterization of the key enzymes pyrophosphatase and acetyl-CoA synthetase.	Berger S, Welte C, Deppenmeier U.	Archaea	10.1155/2012/315153	2012
Enzymology	Enzymology of the wood-Ljungdahl pathway of acetogenesis.	Ragsdale SW.	Ann N Y Acad Sci	10.1196/annals.1419.015	2008
	Flavodiiron oxygen reductase from Entamoeba histolytica: modulation of substrate preference by tyrosine 271 and lysine 53.	Goncalves VL, Vicente JB, Pinto L, Romao CV, Frazao C, Sarti P, Giuffre A, Teixeira M.	J Biol Chem	10.1074/jbc.m114.579086	2014
	Evolutionary links between FliH/YscL-like proteins from bacterial type III secretion systems and second-stalk components of the FoF1 and vacuolar ATPases.	Pallen MJ, Bailey CM, Beatson SA.	Protein Sci	10.1110/ps.051958806	2006
Metabolism	Characterization of the RnfB and RnfG subunits of the Rnf complex from the archaeon Methanosarcina acetivorans.	Suharti S, Wang M, de Vries S, Ferry JG.	PLoS One	10.1371/journal.pone.0097966	2014
Metabolism	The photochemical mechanism of a B12-dependent photoreceptor protein.	Kutta RJ, Hardman SJO, Johannissen LO, Bellina B, Messiha HL, Ortiz-Guerrero JM, Elias-Arnanz M, Padmanabhan S, Barran P, Scrutton NS, Jones AR.	Nat Commun	10.1038/ncomms8907	2015
Metabolism	Insights into Flavin-based Electron Bifurcation via the NADH-dependent Reduced Ferredoxin:NADP Oxidoreductase Structure.	Demmer JK, Huang H, Wang S, Demmer U, Thauer RK, Ermler U.	J Biol Chem	10.1074/jbc.m115.656520	2015
Enzymology	Origin and Evolution of Flavin-Based Electron Bifurcating Enzymes.	Poudel S, Dunham EC, Lindsay MR, Amenabar MJ, Fones EM, Colman DR, Boyd ES.	Front Microbiol	10.3389/fmicb.2018.01762	2018
Metabolism	Mechanism of oxygen detoxification by the surprisingly oxygen-tolerant hyperthermophilic archaeon, Pyrococcus furiosus.	Thorgersen MP, Stirrett K, Scott RA, Adams MW, Adams MW.	Proc Natl Acad Sci U S A	10.1073/pnas.1208605109	2012
	Five-gene cluster in Clostridium thermoaceticum consisting of two divergent operons encoding rubredoxin oxidoreductase- rubredoxin and rubrerythrin-type A flavoprotein- high-molecular-weight rubredoxin.	Das A, Coulter ED, Kurtz DM, Ljungdahl LG.	J Bacteriol	10.1128/jb.183.5.1560-1567.2001	2001
Metabolism	A new pathway for the synthesis of alpha-ribazole-phosphate in Listeria innocua.	Gray MJ, Escalante-Semerena JC.	Mol Microbiol	10.1111/j.1365-2958.2010.07294.x	2010
Metabolism	Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions.	Men Y, Lee PK, Harding KC, Alvarez-Cohen L.	Appl Microbiol Biotechnol	10.1007/s00253-013-4896-8	2013
	Tuning Microbial Activity via Programmatic Alteration of Cell/Substrate Interfaces.	Gulyuk AV, LaJeunesse DR, Collazo R, Ivanisevic A.	Adv Mater	10.1002/adma.202004655	2021
Metabolism	Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.	Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Puhler A, Klenk HP, Richter M, Schuler M, Glockner FO, Meyerdierks A, Gottschalk G, Amann R.	Environ Microbiol	10.1111/j.1462-2920.2008.01825.x	2009
Metabolism	Growth inhibition of Sporomusa ovata by incorporation of benzimidazole bases into cobamides.	Mok KC, Taga ME.	J Bacteriol	10.1128/jb.01282-12	2013
Metabolism	A genome-guided analysis of energy conservation in the thermophilic, cytochrome-free acetogenic bacterium Thermoanaerobacter kivui.	Hess V, Poehlein A, Weghoff MC, Daniel R, Muller V.	BMC Genomics	10.1186/1471-2164-15-1139	2014
Metabolism	Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer.	Mussmann M, Richter M, Lombardot T, Meyerdierks A, Kuever J, Kube M, Glockner FO, Amann R.	J Bacteriol	10.1128/jb.187.20.7126-7137.2005	2005
Metabolism	Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity.	Lu F, Bize A, Guillot A, Monnet V, Madigou C, Chapleur O, Mazeas L, He P, Bouchez T.	ISME J	10.1038/ismej.2013.120	2014
Genetics	The impact of long-distance horizontal gene transfer on prokaryotic genome size.	Cordero OX, Hogeweg P.	Proc Natl Acad Sci U S A	10.1073/pnas.0907584106	2009
	Quantitative RNA-seq Analysis Unveils Osmotic and Thermal Adaptation Mechanisms Relevant for Ectoine Production in Chromohalobacter salexigens.	Salvador M, Argandona M, Naranjo E, Piubeli F, Nieto JJ, Csonka LN, Vargas C.	Front Microbiol	10.3389/fmicb.2018.01845	2018
Genetics	Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence.	Yassin AF, Langenberg S, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Mukherjee S, Reddy TBK, Daum C, Shapiro N, Ivanova N, Woyke T, Kyrpides NC.	PLoS One	10.1371/journal.pone.0188914	2017
Metabolism	Energetics and Application of Heterotrophy in Acetogenic Bacteria.	Schuchmann K, Muller V.	Appl Environ Microbiol	10.1128/aem.00882-16	2016
	Hydrocarbon bio-jet fuel from bioconversion of poplar biomass: techno-economic assessment.	Crawford JT, Shan CW, Budsberg E, Morgan H, Bura R, Gustafson R.	Biotechnol Biofuels	10.1186/s13068-016-0545-7	2016
Metabolism	Isolation and characterization of a soluble NADPH-dependent Fe(III) reductase from Geobacter sulfurreducens.	Kaufmann F, Lovley DR.	J Bacteriol	10.1128/jb.183.15.4468-4476.2001	2001
Metabolism	Isolation and characterization of a new CO-utilizing strain, Thermoanaerobacter thermohydrosulfuricus subsp. carboxydovorans, isolated from a geothermal spring in Turkey.	Balk M, Heilig HG, van Eekert MH, Stams AJ, Rijpstra IC, Sinninghe-Damste JS, de Vos WM, Kengen SW.	Extremophiles	10.1007/s00792-009-0276-9	2009
Metabolism	O2 and reactive oxygen species detoxification complex, composed of O2-responsive NADH:rubredoxin oxidoreductase-flavoprotein A2-desulfoferrodoxin operon enzymes, rubperoxin, and rubredoxin, in Clostridium acetobutylicum.	Kawasaki S, Sakai Y, Takahashi T, Suzuki I, Niimura Y.	Appl Environ Microbiol	10.1128/aem.01425-08	2009
Enzymology	Crystal structures of Streptococcus suis mannonate dehydratase (ManD) and its complex with substrate: genetic and biochemical evidence for a catalytic mechanism.	Zhang Q, Gao F, Peng H, Cheng H, Liu Y, Tang J, Thompson J, Wei G, Zhang J, Du Y, Yan J, Gao GF.	J Bacteriol	10.1128/jb.00599-09	2009
Metabolism	Proteomic analysis of Haloferax volcanii reveals salinity-mediated regulation of the stress response protein PspA.	Bidle KA, Kirkland PA, Nannen JL, Maupin-Furlow JA.	Microbiology (Reading)	10.1099/mic.0.2007/015586-0	2008
	In vivo mutational analysis of YtvA from Bacillus subtilis: mechanism of light activation of the general stress response.	Avila-Perez M, Vreede J, Tang Y, Bende O, Losi A, Gartner W, Hellingwerf K.	J Biol Chem	10.1074/jbc.m109.033316	2009
Genetics	Genome-guided analysis of physiological capacities of Tepidanaerobacter acetatoxydans provides insights into environmental adaptations and syntrophic acetate oxidation.	Muller B, Manzoor S, Niazi A, Bongcam-Rudloff E, Schnurer A.	PLoS One	10.1371/journal.pone.0121237	2015
Metabolism	The Mo-Se active site of nicotinate dehydrogenase.	Wagener N, Pierik AJ, Ibdah A, Hille R, Dobbek H.	Proc Natl Acad Sci U S A	10.1073/pnas.0902210106	2009
Metabolism	Nitrous oxide production and consumption: regulation of gene expression by gas-sensitive transcription factors.	Spiro S.	Philos Trans R Soc Lond B Biol Sci	10.1098/rstb.2011.0309	2012
Metabolism	Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil.	Hunger S, Schmidt O, Hilgarth M, Horn MA, Kolb S, Conrad R, Drake HL.	Appl Environ Microbiol	10.1128/aem.00282-11	2011
Metabolism	Chemolithotrophic acetogenic H2/CO2 utilization in Italian rice field soil.	Liu F, Conrad R.	ISME J	10.1038/ismej.2011.17	2011
Metabolism	Emergence of cytochrome bc complexes in the context of photosynthesis.	Dibrova DV, Shalaeva DN, Galperin MY, Mulkidjanian AY.	Physiol Plant	10.1111/ppl.12586	2017
	When the inhibitor tells more than the substrate: the cyanide-bound state of a carbon monoxide dehydrogenase.	Ciaccafava A, Tombolelli D, Domnik L, Fesseler J, Jeoung JH, Dobbek H, Mroginski MA, Zebger I, Hildebrandt P.	Chem Sci	10.1039/c5sc04554a	2016
Metabolism	A thermostable hybrid cluster protein from Pyrococcus furiosus: effects of the loss of a three helix bundle subdomain.	Overeijnder ML, Hagen WR, Hagedoorn PL.	J Biol Inorg Chem	10.1007/s00775-009-0483-y	2009
Metabolism	Tight coupling of partial reactions in the acetyl-CoA decarbonylase/synthase (ACDS) multienzyme complex from Methanosarcina thermophila: acetyl C-C bond fragmentation at the a cluster promoted by protein conformational changes.	Gencic S, Duin EC, Grahame DA.	J Biol Chem	10.1074/jbc.m109.080994	2010
Metabolism	Functional analysis of the Helicobacter pylori flagellar switch proteins.	Lowenthal AC, Hill M, Sycuro LK, Mehmood K, Salama NR, Ottemann KM.	J Bacteriol	10.1128/jb.00749-09	2009
Metabolism	Insights into the posttranslational assembly of the Mo-, S- and Cu-containing cluster in the active site of CO dehydrogenase of Oligotropha carboxidovorans.	Pelzmann AM, Mickoleit F, Meyer O.	J Biol Inorg Chem	10.1007/s00775-014-1201-y	2014
Genetics	Salt resistance genes revealed by functional metagenomics from brines and moderate-salinity rhizosphere within a hypersaline environment.	Mirete S, Mora-Ruiz MR, Lamprecht-Grandio M, de Figueras CG, Rossello-Mora R, Gonzalez-Pastor JE.	Front Microbiol	10.3389/fmicb.2015.01121	2015
Metabolism	Cloning and expression of a novel NADP(H)-dependent daidzein reductase, an enzyme involved in the metabolism of daidzein, from equol-producing Lactococcus strain 20-92.	Shimada Y, Yasuda S, Takahashi M, Hayashi T, Miyazawa N, Sato I, Abiru Y, Uchiyama S, Hishigaki H.	Appl Environ Microbiol	10.1128/aem.01101-10	2010
Metabolism	Significant bias against the ACA triplet in the tmRNA sequence of Escherichia coli K-12.	Baik S, Inoue K, Ouyang M, Inouye M.	J Bacteriol	10.1128/jb.00699-09	2009
Enzymology	Evidence for horizontal gene transfer of anaerobic carbon monoxide dehydrogenases.	Techtmann SM, Lebedinsky AV, Colman AS, Sokolova TG, Woyke T, Goodwin L, Robb FT.	Front Microbiol	10.3389/fmicb.2012.00132	2012
Enzymology	Crystal structure of alkyl hydroperoxidase D like protein PA0269 from Pseudomonas aeruginosa: homology of the AhpD-like structural family.	Clarke TE, Romanov V, Chirgadze YN, Klomsiri C, Kisselman G, Wu-Brown J, Poole LB, Pai EF, Chirgadze NY.	BMC Struct Biol	10.1186/1472-6807-11-27	2011
Enzymology	Clostridium pasteurianum F1Fo ATP synthase: operon, composition, and some properties.	Das A, Ljungdahl LG.	J Bacteriol	10.1128/jb.185.18.5527-5535.2003	2003
Metabolism	A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem.	Takami H, Noguchi H, Takaki Y, Uchiyama I, Toyoda A, Nishi S, Chee GJ, Arai W, Nunoura T, Itoh T, Hattori M, Takai K.	PLoS One	10.1371/journal.pone.0030559	2012
	Adaptive responses to oxygen stress in obligatory anaerobes Clostridium acetobutylicum and Clostridium aminovalericum.	Kawasaki S, Watamura Y, Ono M, Watanabe T, Takeda K, Niimura Y.	Appl Environ Microbiol	10.1128/aem.71.12.8442-8450.2005	2005
Metabolism	Radical reactions of thiamin pyrophosphate in 2-oxoacid oxidoreductases.	Reed GH, Ragsdale SW, Mansoorabadi SO.	Biochim Biophys Acta	10.1016/j.bbapap.2011.11.010	2012
Genetics	Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction.	Kim SH, Harzman C, Davis JK, Hutcheson R, Broderick JB, Marsh TL, Tiedje JM.	BMC Microbiol	10.1186/1471-2180-12-21	2012
Metabolism	Transient B12-dependent methyltransferase complexes revealed by small-angle X-ray scattering.	Ando N, Kung Y, Can M, Bender G, Ragsdale SW, Drennan CL.	J Am Chem Soc	10.1021/ja3055782	2012
Enzymology	Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria.	Techtmann SM, Colman AS, Murphy MB, Schackwitz WS, Goodwin LA, Robb FT.	Front Microbiol	10.3389/fmicb.2011.00147	2011
Phylogeny	A simple, fast, and accurate method of phylogenomic inference.	Wu M, Eisen JA.	Genome Biol	10.1186/gb-2008-9-10-r151	2008
Metabolism	Na+-translocating membrane pyrophosphatases are widespread in the microbial world and evolutionarily precede H+-translocating pyrophosphatases.	Luoto HH, Belogurov GA, Baykov AA, Lahti R, Malinen AM.	J Biol Chem	10.1074/jbc.m111.244483	2011
	Trace element and temperature effects on microbial communities and links to biogas digester performance at high ammonia levels.	Westerholm M, Muller B, Isaksson S, Schnurer A.	Biotechnol Biofuels	10.1186/s13068-015-0328-6	2015
Metabolism	Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments.	Imachi H, Sekiguchi Y, Kamagata Y, Loy A, Qiu YL, Hugenholtz P, Kimura N, Wagner M, Ohashi A, Harada H.	Appl Environ Microbiol	10.1128/aem.72.3.2080-2091.2006	2006
Enzymology	Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1).	Herlemann DP, Geissinger O, Ikeda-Ohtsubo W, Kunin V, Sun H, Lapidus A, Hugenholtz P, Brune A.	Appl Environ Microbiol	10.1128/aem.02698-08	2009
	Cyanuric acid hydrolase: evolutionary innovation by structural concatenation.	Peat TS, Balotra S, Wilding M, French NG, Briggs LJ, Panjikar S, Cowieson N, Newman J, Scott C.	Mol Microbiol	10.1111/mmi.12249	2013
Genetics	Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.	Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, Zhulin IB, Robb FT, Eisen JA.	PLoS Genet	10.1371/journal.pgen.0010065	2005
	Gas Fermentation-A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks.	Liew F, Martin ME, Tappel RC, Heijstra BD, Mihalcea C, Kopke M.	Front Microbiol	10.3389/fmicb.2016.00694	2016
Metabolism	Dissecting the in vivo metabolic potential of two human gut acetogens.	Rey FE, Faith JJ, Bain J, Muehlbauer MJ, Stevens RD, Newgard CB, Gordon JI.	J Biol Chem	10.1074/jbc.m110.117713	2010
Proteome	An automated procedure for detecting protein folds from sub-nanometer resolution electron density.	Khayat R, Lander GC, Johnson JE.	J Struct Biol	10.1016/j.jsb.2009.12.014	2010
Metabolism	Thermoanaerobacter thermohydrosulfuricus WC1 shows protein complement stability during fermentation of key lignocellulose-derived substrates.	Verbeke TJ, Spicer V, Krokhin OV, Zhang X, Schellenberg JJ, Fristensky B, Wilkins JA, Levin DB, Sparling R.	Appl Environ Microbiol	10.1128/aem.03555-13	2014
Metabolism	Genetic and metabolic engineering challenges of C1-gas fermenting acetogenic chassis organisms.	Bourgade B, Minton NP, Islam MA.	FEMS Microbiol Rev	10.1093/femsre/fuab008	2021
	Solution structure of the guanine nucleotide-binding STAS domain of SLC26-related SulP protein Rv1739c from Mycobacterium tuberculosis.	Sharma AK, Ye L, Baer CE, Shanmugasundaram K, Alber T, Alper SL, Rigby AC.	J Biol Chem	10.1074/jbc.m110.165449	2011
	Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya.	Muturi SM, Muthui LW, Njogu PM, Onguso JM, Wachira FN, Opiyo SO, Pelle R.	PLoS One	10.1371/journal.pone.0244755	2021
Enzymology	Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities.	Brazelton WJ, Nelson B, Schrenk MO.	Front Microbiol	10.3389/fmicb.2011.00268	2012
Metabolism	Metabolic and evolutionary relationships among Pyrococcus Species: genetic exchange within a hydrothermal vent environment.	Hamilton-Brehm SD, Schut GJ, Adams MW, Adams MW.	J Bacteriol	10.1128/jb.187.21.7492-7499.2005	2005
Metabolism	Targeting methanopterin biosynthesis to inhibit methanogenesis.	Dumitru R, Palencia H, Schroeder SD, DeMontigny BA, Takacs JM, Rasche ME, Miner JL, Ragsdale SW.	Appl Environ Microbiol	10.1128/aem.69.12.7236-7241.2003	2003
Metabolism	Anaerobic carbon monoxide dehydrogenase diversity in the homoacetogenic hindgut microbial communities of lower termites and the wood roach.	Matson EG, Gora KG, Leadbetter JR.	PLoS One	10.1371/journal.pone.0019316	2011
Metabolism	Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria.	Meyer MM, Roth A, Chervin SM, Garcia GA, Breaker RR.	RNA	10.1261/rna.937308	2008
Metabolism	Evidence that ubiquinone is a required intermediate for rhodoquinone biosynthesis in Rhodospirillum rubrum.	Brajcich BC, Iarocci AL, Johnstone LA, Morgan RK, Lonjers ZT, Hotchko MJ, Muhs JD, Kieffer A, Reynolds BJ, Mandel SM, Marbois BN, Clarke CF, Shepherd JN.	J Bacteriol	10.1128/jb.01040-09	2010
Metabolism	Clostridium scindens baiCD and baiH genes encode stereo-specific 7alpha/7beta-hydroxy-3-oxo-delta4-cholenoic acid oxidoreductases.	Kang DJ, Ridlon JM, Moore DR, Barnes S, Hylemon PB.	Biochim Biophys Acta	10.1016/j.bbalip.2007.10.008	2008
Metabolism	The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.	Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R.	Environ Microbiol	10.1111/j.1462-2920.2010.02242.x	2010
Metabolism	Two atypical L-cysteine-regulated NADPH-dependent oxidoreductases involved in redox maintenance, L-cystine and iron reduction, and metronidazole activation in the enteric protozoan Entamoeba histolytica.	Jeelani G, Husain A, Sato D, Ali V, Suematsu M, Soga T, Nozaki T.	J Biol Chem	10.1074/jbc.m110.106310	2010
	Synthetic analogues of the active site of the A-cluster of acetyl coenzyme A synthase/CO dehydrogenase: syntheses, structures, and reactions with CO.	Harrop TC, Olmstead MM, Mascharak PK.	Inorg Chem	10.1021/ic0520465	2006
	Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH.	Fischer RJ, Oehmcke S, Meyer U, Mix M, Schwarz K, Fiedler T, Bahl H.	J Bacteriol	10.1128/jb.00491-06	2006
Metabolism	A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism.	Regulski EE, Moy RH, Weinberg Z, Barrick JE, Yao Z, Ruzzo WL, Breaker RR.	Mol Microbiol	10.1111/j.1365-2958.2008.06208.x	2008
	Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea.	Chadwick GL, Skennerton CT, Laso-Perez R, Leu AO, Speth DR, Yu H, Morgan-Lang C, Hatzenpichler R, Goudeau D, Malmstrom R, Brazelton WJ, Woyke T, Hallam SJ, Tyson GW, Wegener G, Boetius A, Orphan VJ.	PLoS Biol	10.1371/journal.pbio.3001508	2022
Metabolism	Genomic evaluation of Thermoanaerobacter spp. for the construction of designer co-cultures to improve lignocellulosic biofuel production.	Verbeke TJ, Zhang X, Henrissat B, Spicer V, Rydzak T, Krokhin OV, Fristensky B, Levin DB, Sparling R.	PLoS One	10.1371/journal.pone.0059362	2013
Genetics	Assembling networks of microbial genomes using linear programming.	Holloway C, Beiko RG.	BMC Evol Biol	10.1186/1471-2148-10-360	2010
	Quantitative analysis of mutation and selection pressures on base composition skews in bacterial chromosomes.	Chen C, Chen CW.	BMC Genomics	10.1186/1471-2164-8-286	2007
Enzymology	The enzymes of the 10-formyl-tetrahydrofolate synthetic pathway are found exclusively in the cytosol of the trypanosomatid parasite Leishmania major.	Vickers TJ, Murta SM, Mandell MA, Beverley SM.	Mol Biochem Parasitol	10.1016/j.molbiopara.2009.03.009	2009
Metabolism	Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots.	Kusel K, Karnholz A, Trinkwalter T, Devereux R, Acker G, Drake HL.	Appl Environ Microbiol	10.1128/aem.67.10.4734-4741.2001	2001
	Identification and analysis of novel amino-acid sequence repeats in Bacillus anthracis str. Ames proteome using computational tools.	Hemalatha GR, Rao DS, Guruprasad L.	Comp Funct Genomics	10.1155/2007/47161	2007
Enzymology	Purification of the formate-tetrahydrofolate ligase from Methylobacterium extorquens AM1 and demonstration of its requirement for methylotrophic growth.	Marx CJ, Laukel M, Vorholt JA, Lidstrom ME.	J Bacteriol	10.1128/jb.185.24.7169-7175.2003	2003
	Selenocysteine tRNA-specific elongation factor SelB is a structural chimaera of elongation and initiation factors.	Leibundgut M, Frick C, Thanbichler M, Bock A, Ban N.	EMBO J	10.1038/sj.emboj.7600505	2005
Metabolism	Comparative genomic analysis of T-box regulatory systems in bacteria.	Vitreschak AG, Mironov AA, Lyubetsky VA, Gelfand MS.	RNA	10.1261/rna.819308	2008
Metabolism	Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase.	Evans JC, Huddler DP, Hilgers MT, Romanchuk G, Matthews RG, Ludwig ML.	Proc Natl Acad Sci U S A	10.1073/pnas.0308082100	2004
Genetics	Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes.	Galperin MY, Mekhedov SL, Puigbo P, Smirnov S, Wolf YI, Rigden DJ.	Environ Microbiol	10.1111/j.1462-2920.2012.02841.x	2012
Metabolism	Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough.	Mukhopadhyay A, Redding AM, Joachimiak MP, Arkin AP, Borglin SE, Dehal PS, Chakraborty R, Geller JT, Hazen TC, He Q, Joyner DC, Martin VJ, Wall JD, Yang ZK, Zhou J, Keasling JD.	J Bacteriol	10.1128/jb.00368-07	2007
Metabolism	Hydrogen-dependent oxygen reduction by homoacetogenic bacteria isolated from termite guts.	Boga HI, Brune A.	Appl Environ Microbiol	10.1128/aem.69.2.779-786.2003	2003
Metabolism	Biochemical and molecular characterization of a Na+-translocating F1Fo-ATPase from the thermoalkaliphilic bacterium Clostridium paradoxum.	Ferguson SA, Keis S, Cook GM.	J Bacteriol	10.1128/jb.00128-06	2006
Enzymology	Low-molecular-weight protein tyrosine phosphatases of Bacillus subtilis.	Musumeci L, Bongiorni C, Tautz L, Edwards RA, Osterman A, Perego M, Mustelin T, Bottini N.	J Bacteriol	10.1128/jb.187.14.4945-4956.2005	2005
	Expansion of the clavulanic acid gene cluster: identification and in vivo functional analysis of three new genes required for biosynthesis of clavulanic acid by Streptomyces clavuligerus.	Li R, Khaleeli N, Townsend CA.	J Bacteriol	10.1128/jb.182.14.4087-4095.2000	2000
Genetics	Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195.	Nonaka H, Keresztes G, Shinoda Y, Ikenaga Y, Abe M, Naito K, Inatomi K, Furukawa K, Inui M, Yukawa H.	J Bacteriol	10.1128/jb.188.6.2262-2274.2006	2006
Metabolism	Spectroscopic characterization of heme iron-nitrosyl species and their role in NO reductase mechanisms in diiron proteins.	Moenne-Loccoz P.	Nat Prod Rep	10.1039/b604194a	2007
Metabolism	The Iron control element, acting in positive and negative control of iron-regulated Bradyrhizobium japonicum genes, is a target for the Irr protein.	Rudolph G, Semini G, Hauser F, Lindemann A, Friberg M, Hennecke H, Fischer HM.	J Bacteriol	10.1128/jb.188.2.733-744.2006	2006
Metabolism	Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0.	Laville J, Blumer C, Von Schroetter C, Gaia V, Defago G, Keel C, Haas D.	J Bacteriol	10.1128/jb.180.12.3187-3196.1998	1998
Metabolism	Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.	Lo CC, Bonner CA, Xie G, D'Souza M, Jensen RA.	Microbiol Mol Biol Rev	10.1128/mmbr.00024-09	2009
Metabolism	Structure, function, and mechanism of the nickel metalloenzymes, CO dehydrogenase, and acetyl-CoA synthase.	Can M, Armstrong FA, Ragsdale SW.	Chem Rev	10.1021/cr400461p	2014
	Cobalamin- and corrinoid-dependent enzymes.	Matthews RG.	Met Ions Life Sci	10.1039/bk9781847559159-00053	2009
Metabolism	CO-sensing mechanisms.	Roberts GP, Youn H, Kerby RL.	Microbiol Mol Biol Rev	10.1128/mmbr.68.3.453-473.2004	2004
Metabolism	Old acetogens, new light.	Drake HL, Gossner AS, Daniel SL	Ann N Y Acad Sci	10.1196/annals.1419.016	2008
Genetics	Complete Genome Sequence of the Type Strain of the Acetogenic Bacterium Moorella thermoacetica DSM 521T.	Poehlein A, Bengelsdorf FR, Esser C, Schiel-Bengelsdorf B, Daniel R, Durre P	Genome Announc	10.1128/genomeA.01159-15	2015
Metabolism	Atypical one-carbon metabolism of an acetogenic and hydrogenogenic Moorella thermoacetica strain.	Jiang B, Henstra AM, Paulo PL, Balk M, van Doesburg W, Stams AJ	Arch Microbiol	10.1007/s00203-008-0435-x	2008
	Moorella caeni sp. nov., isolated from thermophilic anaerobic sludge from a methanol-fed reactor.	Vecchini Santaella N, Sousa DZ, Stams AJM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005905	2023
	Natranaerofaba carboxydovora gen. nov., sp. nov., an extremely haloalkaliphilic CO-utilizing acetogen from a hypersaline soda lake representing a novel deep phylogenetic lineage in the class 'Natranaerobiia'.	Sorokin DY, Diender M, Merkel AY, Koenen M, Bale NJ, Pabst M, Sinninghe Damste JS, Sousa DZ.	Environ Microbiol	10.1111/1462-2920.15241	2021
	Phenotypic and genomic characterization of Bathyarchaeum tardum gen. nov., sp. nov., a cultivated representative of the archaeal class Bathyarchaeia.	Khomyakova MA, Merkel AY, Mamiy DD, Klyukina AA, Slobodkin AI.	Front Microbiol	10.3389/fmicb.2023.1214631	2023
	Isolation and Genomics of Futiania mangrovii gen. nov., sp. nov., a Rare and Metabolically Versatile Member in the Class Alphaproteobacteria.	Liu L, Huang WC, Pan J, Li J, Huang Y, Zou D, Du H, Liu Y, Li M.	Microbiol Spectr	10.1128/spectrum.04110-22	2023
Metabolism	Methanol utilization by a novel thermophilic homoacetogenic bacterium, Moorella mulderi sp. nov., isolated from a bioreactor.	Balk M, Weijma J, Friedrich MW, Stams AJ.	Arch Microbiol	10.1007/s00203-003-0523-x	2003
Phylogeny	Gelria glutamica gen. nov., sp. nov., a thermophilic, obligately syntrophic, glutamate-degrading anaerobe.	Plugge CM, Balk M, Zoetendal EG, Stams AJM.	Int J Syst Evol Microbiol	10.1099/00207713-52-2-401	2002
Metabolism	(Per)chlorate reduction by the thermophilic bacterium Moorella perchloratireducens sp. nov., isolated from underground gas storage.	Balk M, van Gelder T, Weelink SA, Stams AJ.	Appl Environ Microbiol	10.1128/aem.01743-07	2008
Phylogeny	Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica.	Gossner AS, Devereux R, Ohnemuller N, Acker G, Stackebrandt E, Drake HL.	Appl Environ Microbiol	10.1128/aem.65.11.5124-5133.1999	1999

References

#265	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 521
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32808	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123500	Collection of Institut Pasteur ; Curators of the CIP; CIP 108294
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium thermoaceticum (DSM 521, ATCC 35608, VPI 12954)

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