Geobacter benzoatilyticus (MCCC 1K05659, JCM 39190, Jerry-YX)

Name: Geobacter benzoatilyticus (MCCC 1K05659, JCM 39190, Jerry-YX)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168073

Type strain

Strain Designation Jerry-YX

Culture col. no. MCCC 1K05659 JCM 39190 Jerry-YX

NCBI tax ID(s) 2815309

Special Collections JCM

Links

Geobacter benzoatilyticus Jerry-YX is a bacterium of the family Geobacteraceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133105

JCM 39190

@ref 20215

Last LPSN update 2026-02-09 11:40:43

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfuromonadia

Order Geobacterales

Family Geobacteraceae

Genus Geobacter

Species Geobacter benzoatilyticus

Full scientific name Geobacter benzoatilyticus Yang et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.259
125439	negative	97.7

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	98.7

Spore formation

@ref	Spore formation	Confidence
125439		97.8

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1733885v1 assembly for Geobacter benzoatilyticus Jerry-YX	complete	GCA_017338855	2815309.3	8002193793	2815309	98.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Geobacter benzoatilyticus strain Jerry-YX 16S ribosomal RNA gene, partial sequence	MZ714560	1545		2815309

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Geobacter benzoatilyticus Jerry-YX
NCBI: GCA_017338855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	no	52.10	no
125439	gram_stain	BacteriaNetⓘ	negative	97.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Geobacter benzoatilyticus Jerry-YX
NCBI: GCA_017338855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.26	no
125438	anaerobic	anaerobicⓘ	yes	84.28	no
125438	aerobic	aerobicⓘ	no	86.43	no
125438	spore-forming	spore-formingⓘ	no	84.21	no
125438	thermophilic	thermophileⓘ	no	90.10	no
125438	flagellated	motile2+ⓘ	yes	67.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geobacter benzoatilyticus sp. nov., a novel benzoate-oxidizing, iron-reducing bacterium isolated from petroleum contaminated soil.	Yang G, Li Y, Lin A, Zhuang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005281	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Geobacter benzoatilyticus (MCCC 1K05659, JCM 39190, Jerry-YX)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017338855

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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