Nocardioides mangrovi (JCM 34553, CGMCC 4.7708, GBK3QG-3)

Name: Nocardioides mangrovi (JCM 34553, CGMCC 4.7708, GBK3QG-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168066

Type strain

Strain Designation GBK3QG-3

Culture col. no. JCM 34553 CGMCC 4.7708 GBK3QG-3

NCBI tax ID(s) 2874580

Special Collections JCM

Links

Nocardioides mangrovi GBK3QG-3 is a bacterium of the family Nocardioidaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132073

JCM 34553

@ref 20215

Last LPSN update 2026-05-29 08:46:17

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides mangrovi

Full scientific name Nocardioides mangrovi Chen et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.411

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.128

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2007381v1 assembly for Nocardioides mangrovi GBK3QG-3	contig	GCA_020073815	2874580.10	8056458667	2874580	68.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Nocardioides mangrovi strain GBK3QG-3 16S ribosomal RNA gene, partial sequence	OK035219	1481		35761

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2007381v1 assembly for Nocardioides mangrovi GBK3QG-3
NCBI: GCA_020073815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	85.45	no
125439	gram_stain	BacteriaNetⓘ	positive	99.41	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.13	no
125439	spore_formation	BacteriaNetⓘ	no	68.71	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides mangrovi GBK3QG-3
NCBI: GCA_020073815.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.73	no
125438	anaerobic	anaerobicⓘ	no	98.38	no
125438	aerobic	aerobicⓘ	yes	88.42	no
125438	spore-forming	spore-formingⓘ	no	53.29	no
125438	thermophilic	thermophileⓘ	no	95.27	no
125438	flagellated	motile2+ⓘ	no	63.97	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides mangrovi sp. nov., a novel endophytic actinobacterium isolated from root of Kandelia candel.	Chen MS, Chen F, Chen XH, Zheng ZQ, Ma X, Tuo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005295	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides mangrovi (JCM 34553, CGMCC 4.7708, GBK3QG-3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_020073815

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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