Thermanaeromonas toyohensis (DSM 14490, JCM 11376, ToBE)

Multimedia

• @ref:	66793
  multimedia content:	EM_DSM_14490_1.jpg
  multimedia.multimedia content:	EM_DSM_14490_1.jpg
  caption:	electron microscopic image
  intellectual property rights:	© HZI/Manfred Rohde
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
5376	THERMOANAEROMONAS MEDIUM (DSMZ Medium 963)		Medium recipe at MediaDive	Name: THERMOANAEROMONAS MEDIUM (DSMZ Medium 963) Composition: NaHCO3 4.9456 g/l Na2S2O3 x 5 H2O 1.22651 g/l K2HPO4 0.771513 g/l KH2PO4 0.74184 g/l Yeast extract 0.49456 g/l D-Glucose 0.49456 g/l NH4Cl 0.49456 g/l L-Cysteine HCl x H2O 0.24728 g/l MgSO4 x 7 H2O 0.24728 g/l Nitrilotriacetic acid 0.126607 g/l Na3-EDTA 0.0395648 g/l NaCl 0.0098912 g/l FeSO4 x 7 H2O 0.0098912 g/l FeCl2 x 4 H2O 0.0098912 g/l CaCl2 x 2 H2O 0.00098912 g/l MnCl2 x 4 H2O 0.00098912 g/l ZnCl2 0.00098912 g/l NiCl2 x 6 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l Na2WO4 x 2 H2O 0.000395648 g/l Na2SeO3 x 5 H2O 0.000296736 g/l CoCl2 x 6 H2O 0.000296736 g/l Na2MoO4 x 2 H2O 0.000296736 g/l CuCl2 0.000197824 g/l H3BO3 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Vitamin B12 9.8912e-07 g/l Distilled water

Culture temp

Oxygen tolerance

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	glycogen metabolism	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	propanol degradation	100	7 of 7
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	hydrogen production	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	isoleucine metabolism	100	8 of 8
66794	threonine metabolism	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	87.5	7 of 8
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	glycolysis	82.35	14 of 17
66794	vitamin B12 metabolism	82.35	28 of 34
66794	cellulose degradation	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	starch degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	citric acid cycle	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	vitamin B1 metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	butanoate fermentation	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	pentose phosphate pathway	72.73	8 of 11
66794	purine metabolism	72.34	68 of 94
66794	heme metabolism	71.43	10 of 14
66794	coenzyme M biosynthesis	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	formaldehyde oxidation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	enterobactin biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	acetoin degradation	66.67	2 of 3
66794	leucine metabolism	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	methionine metabolism	61.54	16 of 26
66794	degradation of hexoses	61.11	11 of 18
66794	myo-inositol biosynthesis	60	6 of 10
66794	factor 420 biosynthesis	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	histidine metabolism	58.62	17 of 29
66794	tryptophan metabolism	57.89	22 of 38
66794	cardiolipin biosynthesis	57.14	4 of 7
66794	nitrate assimilation	55.56	5 of 9
66794	phenol degradation	55	11 of 20
66794	vitamin B6 metabolism	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	degradation of pentoses	53.57	15 of 28
66794	non-pathway related	50	19 of 38
66794	Entner Doudoroff pathway	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	1,4-dihydroxy-6-naphthoate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	biotin biosynthesis	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	cysteine metabolism	50	9 of 18
66794	ketogluconate metabolism	50	4 of 8
66794	polyamine pathway	47.83	11 of 23
66794	urea cycle	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	lipid metabolism	45.16	14 of 31
66794	creatinine degradation	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of sugar acids	40	10 of 25
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	lipoate biosynthesis	40	2 of 5
66794	ascorbate metabolism	36.36	8 of 22
66794	metabolism of disaccharids	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	lipid A biosynthesis	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	vitamin E metabolism	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	phenylpropanoid biosynthesis	23.08	3 of 13

Isolation source categories

Isolation

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2503538017 annotated assembly for Thermanaeromonas toyohensis ToBE	chromosome	GCA_900176005	698762.3	2503538017	698762	88.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5376	Thermoanaerobacter sp. ToBE gene for 16S rRNA	AB062280	1506		698762

GC content

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum.	Oehler D, Poehlein A, Leimbach A, Muller N, Daniel R, Gottschalk G, Schink B.	BMC Genomics	10.1186/1471-2164-13-723	2012
Phylogeny	Desulfovirgula thermocuniculi gen. nov., sp. nov., a thermophilic sulfate-reducer isolated from a geothermal underground mine in Japan.	Kaksonen AH, Spring S, Schumann P, Kroppenstedt RM, Puhakka JA	Int J Syst Evol Microbiol	10.1099/ijs.0.64655-0	2007
Phylogeny	Thermanaeromonas burensis sp. nov., a thermophilic anaerobe isolated from a subterranean clay environment.	Gam ZBA, Daumas S, Casalot L, Bartoli-Joseph M, Necib S, Linard Y, Labat M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000739	2015
Phylogeny	Thermanaeromonas toyohensis gen. nov., sp. nov., a novel thermophilic anaerobe isolated from a subterranean vein in the Toyoha Mines.	Mori K, Hanada S, Maruyama A, Marumo K	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1675	2002