Tepidanaerobacter acetatoxydans (DSM 21804, JCM 16047, Re1)

Name: Tepidanaerobacter acetatoxydans (DSM 21804, JCM 16047, Re1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16801

Type strain

Strain Designation Re1

Culture col. no. DSM 21804 JCM 16047 Re1

NCBI tax ID(s) 499229

Special Collections DSMZ JCM

History <- A. Schnürer, Univ. Uppsala, Agric. Sci.; Re1 <- A. Schnürer; {2002} A. Schnürer Re1.

Links

Tepidanaerobacter acetatoxydans Re1 is an anaerobe bacterium that was isolated from silage of alfalfa in a stirred laboratory reactor.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399293

JCM 16047,DSM 21804

@ref 20215

Last LPSN update 2026-02-09 11:22:03

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Thermosediminibacterales

Family Tepidanaerobacteraceae

Genus Tepidanaerobacter

Species Tepidanaerobacter acetatoxydans

Full scientific name Tepidanaerobacter acetatoxydans Westerholm et al. 2025

BacDive ID	Other strains from **Tepidanaerobacter acetatoxydans** (3)	Type strain
161708	T. acetatoxydans JCM 16048
161709	T. acetatoxydans JCM 16049
161710	T. acetatoxydans JCM 16050

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15965	TEPIDANAEROBACTER ACETATOXYDANS MEDIUM (DSMZ Medium 1301)		Medium recipe at MediaDive	Name: TEPIDANAEROBACTER ACETATOXYDANS MEDIUM (DSMZ Medium 1301) Composition: D-Glucose 1.8 g/l Na2CO3 1.5 g/l L-Cysteine HCl x H2O 0.5 g/l Na2HPO4 0.43 g/l KH2PO4 0.41 g/l Na2S x 9 H2O 0.3 g/l NH4Cl 0.3 g/l NaCl 0.3 g/l Yeast extract 0.2 g/l CaCl2 x 2 H2O 0.11 g/l MgCl2 x 6 H2O 0.1 g/l FeCl2 x 4 H2O 0.002 g/l Na2-EDTA 0.0005 g/l NaOH 0.0005 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 2e-05 g/l (DL)-alpha-Lipoic acid 1e-05 g/l Riboflavin 1e-05 g/l p-Aminobenzoic acid 1e-05 g/l Calcium D-(+)-pantothenate 1e-05 g/l Thiamine HCl 1e-05 g/l AlCl3 1e-05 g/l Nicotinic acid 1e-05 g/l H3BO3 6e-06 g/l Folic acid 4e-06 g/l Na2WO4 x 2 H2O 4e-06 g/l Biotin 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 2e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15965	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
15965	anaerobe
125438	anaerobe	93.644

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Engineered	#Laboratory	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15965	silage of alfalfa in a stirred laboratory reactor	Uppsala	Sweden	SWE	Europe
67770	Two ammonium-enriched mesophilic methanogenic processes

Taxonmaps

69479

Global distribution of 16S sequence EU386163 (>99% sequence identity) for Tepidanaerobacter acetatoxydans subclade from Microbeatlas

Aquatic Samples	806
Soil Samples	174
Animal Samples	3804
Plant Samples	113
Total Samples	4897

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM21323v1 assembly for Tepidanaerobacter acetatoxydans Re1	complete	GCA_000213235	499229.3	650716094	1209989	99.03
66792	ASM32876v2 assembly for Tepidanaerobacter acetatoxydans Re1	complete	GCA_000328765	1209989.3	2540341113	1209989	87.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15965	Tepidanaerobacter acetatoxydans Re1 16S ribosomal RNA gene, partial sequence	EU386163	1458		1209989

GC content

@ref	GC-content (mol%)	Method
15965	38.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tepidanaerobacter acetatoxydans Re1
NCBI: GCA_000213235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	68.70	no
125439	motility	BacteriaNetⓘ	yes	70.00	no
125439	gram_stain	BacteriaNetⓘ	variable	81.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	89.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tepidanaerobacter acetatoxydans Re1 Re1
NCBI: GCA_000213235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	55.94	no
125438	anaerobic	anaerobicⓘ	yes	93.64	no
125438	aerobic	aerobicⓘ	no	96.54	no
125438	spore-forming	spore-formingⓘ	yes	51.66	no
125438	thermophilic	thermophileⓘ	no	71.50	yes
125438	flagellated	motile2+ⓘ	yes	69.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 224. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006801	2025
Metabolism	First insights into the syntrophic acetate-oxidizing bacteria--a genetic study.	Muller B, Sun L, Schnurer A.	Microbiologyopen	10.1002/mbo3.50	2013
Metabolism	Bioaugmentation of syntrophic acetate-oxidizing culture in biogas reactors exposed to increasing levels of ammonia.	Westerholm M, Leven L, Schnurer A.	Appl Environ Microbiol	10.1128/aem.01637-12	2012
Phylogeny	Tepidanaerobacter acetatoxydans sp. nov., an anaerobic, syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes.	Westerholm M, Roos S, Schnurer A	Syst Appl Microbiol	10.1016/j.syapm.2010.11.018	2011

References

#15965	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21804
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Tepidanaerobacter acetatoxydans (DSM 21804, JCM 16047, Re1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000213235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media