Name: Tepidanaerobacter acetatoxydans Re1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16801

Type strain:

Species: Tepidanaerobacter acetatoxydans

Strain Designation: Re1

Culture col. no.: DSM 21804, JCM 16047

Strain history: A. Schnürer Re1.

NCBI tax ID(s): 499229 (species)

Other strains from Tepidanaerobacter acetatoxydans

T. acetatoxydans JCM 16048
T. acetatoxydans JCM 16049
T. acetatoxydans JCM 16050

Section

Tepidanaerobacter acetatoxydans Re1 is an anaerobe, mesophilic bacterium that was isolated from silage of alfalfa in a stirred laboratory reactor.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermosediminibacterales*
	Family	*Tepidanaerobacteraceae*
	Genus	*Tepidanaerobacter*
	Species	"Tepidanaerobacter acetatoxydans"
	Full Scientific Name (LPSN)	Tepidanaerobacter acetatoxydans Westerholm et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15965]

Culture medium

TEPIDANAEROBACTER ACETATOXYDANS MEDIUM (DSMZ Medium 1301)

[Ref.: #15965]

Culture medium growth

[Ref.: #15965]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15965]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15965]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #15965]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15965]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15965]	Sample type/isolated from	silage of alfalfa in a stirred laboratory reactor
[Ref.: #15965]	Geographic location (country and/or sea, region)	Uppsala
[Ref.: #15965]	Country	Sweden
[Ref.: #15965]	Country ISO 3 Code	SWE
[Ref.: #15965]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Two ammonium-enriched mesophilic methanogenic processes
* marker position based on {}

Isolation sources categories

#Engineered	#Bioreactor	-
#Engineered	#Laboratory	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU386163 (>99% sequence identity) for Tepidanaerobacter acetatoxydans subclade from Microbeatlas

Aquatic Samples	806
Soil Samples	174
Animal Samples	3804
Plant Samples	113
Total Samples	4897

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15965]	Tepidanaerobacter acetatoxydans Re1 16S ribosomal RNA gene, partial sequence	EU386163	1458	ENA	1209989 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tepidanaerobacter acetatoxydans Re1	GCA_000213235	complete	GenBank	1209989 tax ID	*
[Ref.: #66792]	Tepidanaerobacter acetatoxydans Re1	GCA_000328765	complete	GenBank	1209989 tax ID	*
[Ref.: #66792]	Tepidanaerobacter acetatoxydans Re1	1209989.3	complete	PATRIC	1209989 tax ID	*
[Ref.: #66792]	Tepidanaerobacter acetatoxydans Re1	2540341113	complete	JGI IMG/M	1209989 tax ID	*

[Ref.: #15965]

GC-content

38.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tepidanaerobacter acetatoxydans Re1 Re1 NCBI: GCA_000213235.1
[Ref.: #69480]	motile	yes	77.233	no
[Ref.: #69480]	flagellated	no	86.326	no
[Ref.: #69480]	gram-positive	no	74.876	no
[Ref.: #69480]	anaerobic	yes	98.97	no
[Ref.: #69480]	halophile	no	88.778	no
[Ref.: #69480]	spore-forming	yes	56.68	no
[Ref.: #69480]	thermophile	yes	95.716	no
[Ref.: #69480]	glucose-util	yes	90.969	no
[Ref.: #69480]	aerobic	no	93.868	yes
[Ref.: #69480]	glucose-ferment	yes	66.05	no

Availability in culture collections External links

[Ref.: #15965]

Culture collection no.

DSM 21804, JCM 16047

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tepidanaerobacter acetatoxydans sp. nov., an anaerobic, syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes.	Westerholm M, Roos S, Schnurer A	Syst Appl Microbiol	10.1016/j.syapm.2010.11.018	2011	*

References

#15965

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21804

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Tepidanaerobacter acetatoxydans Re1 Re1

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