Xanthomonas hydrangeae (LMG 31884, CCOS 1956, GBBC 2123)

Name: Xanthomonas hydrangeae (LMG 31884, CCOS 1956, GBBC 2123)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167988

Type strain

Strain Designation GBBC 2123

Culture col. no. LMG 31884 CCOS 1956 GBBC 2123

NCBI tax ID(s) 2775159

Links

Xanthomonas hydrangeae GBBC 2123 is a bacterium of the family Lysobacteraceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 366414

LMG 31884

@ref 20215

Last LPSN update 2026-05-29 08:46:16

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas hydrangeae

Full scientific name Xanthomonas hydrangeae Dia et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.317
125438	negative	98.244

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.265

Spore formation

@ref	Spore formation	Confidence
125439		98.781

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG_31884 assembly for Xanthomonas hydrangeae LMG 31884	complete	GCA_905142475	2775159.3	8111091441	2775159	72.87

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Xanthomonas sp. LMG 31884 partial 16S rRNA gene, strain LMG 31884, isolate GBBC 2123	OU231258	1431		2775159
124043	Xanthomonas sp. LMG 31884 partial 16S rRNA gene, strain LMG 31884, isolate GBBC 2123	LR994542	905		2775159

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: LMG_31884 assembly for Xanthomonas hydrangeae LMG 31884
BV-BRC: 2775159.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	yes	81.80	no
125439	gram_stain	BacteriaNetⓘ	negative	97.32	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.27	no
125439	spore_formation	BacteriaNetⓘ	no	98.78	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Xanthomonas hydrangeae LMG 31884
NCBI: GCA_905142475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.24	no
125438	anaerobic	anaerobicⓘ	no	98.73	no
125438	aerobic	aerobicⓘ	yes	86.02	no
125438	spore-forming	spore-formingⓘ	no	88.87	no
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	68.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Xanthomonas hydrangeae sp. nov., a novel plant pathogen isolated from Hydrangea arborescens.	Dia NC, Van Vaerenbergh J, Van Malderghem C, Blom J, Smits THM, Cottyn B, Pothier JF	Int J Syst Evol Microbiol	10.1099/ijsem.0.005163	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xanthomonas hydrangeae (LMG 31884, CCOS 1956, GBBC 2123)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_905142475

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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