Tepidanaerobacter syntrophicus JL | Type strain | DSM 15584, JCM 12098, NBRC 100060

Strain identifier

BacDive ID: 16798

Type strain:

Species: Tepidanaerobacter syntrophicus

Strain Designation: JL

Culture col. no.: DSM 15584, JCM 12098, NBRC 100060

Strain history: <- Y. Sekiguchi, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki, Japan; JL <- Y. Sekiguchi and M. Muramatsu {2002}

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Tepidanaerobacter syntrophicus JL is an anaerobe, thermophilic, gram-negative bacterium that was isolated from thermophilic anaerobic digested sewage sludge.

gram-negative
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Clostridia
	Order	Thermosediminibacterales
	Family	Tepidanaerobacteraceae
	Genus	Tepidanaerobacter
	Species	Tepidanaerobacter syntrophicus
	Full Scientific Name (PNU)	Tepidanaerobacter syntrophicus Sekiguchi et al. 2006

Information on morphological and physiological propertiesMorphology

[Ref.: #31717]	Gram stain	negative
[Ref.: #31717]	Cell length	1.5-10 µm
[Ref.: #31717]	Cell width	0.6-0.8 µm
[Ref.: #31717]	Cell shape	rod-shaped
[Ref.: #31717]	Motility	no

[Ref.: #31717]

Pigment production

yes

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #5906]

Culture medium

TEPIDANAEROBACTER MEDIUM (DSMZ Medium 1051), anaerobic

[Ref.: #5906]

Culture medium growth

[Ref.: #5906]

Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #5906]	growth	45 ̊C
[Ref.: #31717]	growth	25-60 ̊C
[Ref.: #31717]	optimum	45-50 ̊C

[Ref.: #5906]	Temperature range	thermophilic
[Ref.: #31717]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31717]			optimum	7
[Ref.: #31717]			growth	5.5-8.5

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #5906]	Oxygen tolerance	anaerobe
[Ref.: #31717]	Oxygen tolerance	anaerobe

[Ref.: #31717]

Ability of spore formation

[Ref.: #31717]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31717]	arabinose ChEBI	+	carbon source
[Ref.: #31717]	galactose ChEBI	+	carbon source
[Ref.: #31717]	malate ChEBI	+	carbon source
[Ref.: #31717]	raffinose ChEBI	+	carbon source
[Ref.: #31717]	ribose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #5906]	Sample type/isolated from	thermophilic anaerobic digested sewage sludge
[Ref.: #5906]	Geographic location (country and/or sea, region)	Niigata
[Ref.: #5906]	Country	Japan
[Ref.: #5906]	Country ISO 3 Code	JPN
[Ref.: #5906]	Continent	Asia

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	#Sewage sludge
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #5906]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5906]	Tepidanaerobacter syntrophicus gene for 16S rRNA, partial sequence, strain: JL	AB106353	1451	ENA	224999 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tepidanaerobacter syntrophicus JL	GCA_001485475	scaffold	GenBank	224999 tax ID
[Ref.: #66792]	Tepidanaerobacter syntrophicus AS04akNAM_46	GCA_012839965	contig	GenBank	224999 tax ID
[Ref.: #66792]	Tepidanaerobacter syntrophicus strain JL	224999.3	wgs	PATRIC	224999 tax ID

[Ref.: #31717]

GC-content

38 mol%

Availability in culture collectionsExternal links

[Ref.: #5906]

Culture collection no.

DSM 15584, JCM 12098, NBRC 100060

[Ref.: #20218]

Associated Passport(s) in StrainInfo

690505, 690506, 690507

References

#5906

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15584

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31717

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #27993 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27993

IJSEM 1629 2006 ( DOI 10.1099/ijs.0.64112-0 )

* These References are textmined

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