Name: Caldanaerobacter subterraneus subsp. yonseiensis KB-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16793

Type strain:

Species: Caldanaerobacter subterraneus subsp. yonseiensis

Strain Designation: KB-1

Culture col. no.: DSM 13777, KFCC 11116

Strain history: <- Y.-R. Pyun, Yonsei University, Seoul, Republic of Korea; KB-1 <- B.-C. Kim {1998}

NCBI tax ID(s): 111519 (subspecies)

SI-ID 49522

DSM 13777

Section

Caldanaerobacter subterraneus subsp. yonseiensis KB-1 is an anaerobe, thermophilic bacterium that was isolated from mixed sample of mud and water from geothermal hot stream.

anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermoanaerobacteraceae*
	Genus	*Caldanaerobacter*
	Species	**Caldanaerobacter subterraneus subsp. yonseiensis**
	Full Scientific Name (LPSN)	Caldanaerobacter subterraneus subsp. yonseiensis (Kim et al. 2001) Fardeau et al. 2004

Synonym

Thermoanaerobacter yonseiensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5161]

Culture medium

RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)

[Ref.: #5161]

Culture medium growth

[Ref.: #5161]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5161]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5161]			growth	75 °C

[Ref.: #5161]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5161]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5161]	Sample type/isolated from	mixed sample of mud and water from geothermal hot stream
[Ref.: #5161]	Geographic location (country and/or sea, region)	Java Island, Sileri
[Ref.: #5161]	Country	Indonesia
[Ref.: #5161]	Country ISO 3 Code	IDN
[Ref.: #5161]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5161]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5161]	Caldanaerobacter subterraneus subsp. yonseiensis partial 16S rRNA gene, type strain DSM 13777T, clone 3	HG970171	1587	ENA	111519 tax ID
[Ref.: #5161]	Caldanaerobacter subterraneus subsp. yonseiensis partial 16S rRNA gene, type strain DSM 13777T, clone 1	HG970169	1526	ENA	111519 tax ID
[Ref.: #5161]	Caldanaerobacter subterraneus subsp. yonseiensis partial 16S rRNA gene, type strain DSM 13777T, clone 2	HG970170	1524	ENA	111519 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldanaerobacter subterraneus subsp. yonseiensis KB-1	GCA_000473865	contig	GenBank	1388761 tax ID	*
[Ref.: #66792]	Caldanaerobacter subterraneus subsp. yonseiensis KB-1	1388761.3	wgs	PATRIC	1388761 tax ID	*

[Ref.: #5161]

GC-content

37 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldanaerobacter subterraneus subsp. yonseiensis KB-1 PATRIC: 1388761.3
[Ref.: #69480]	motile	yes	84.227	no
[Ref.: #69480]	gram-positive	no	66.938	no
[Ref.: #69480]	anaerobic	yes	99.523	yes
[Ref.: #69480]	halophile	no	96.925	no
[Ref.: #69480]	spore-forming	yes	91.247	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-util	yes	91.35	no
[Ref.: #69480]	aerobic	no	98.281	yes
[Ref.: #69480]	flagellated	no	82.629	no
[Ref.: #69480]	glucose-ferment	yes	59.268	no

Availability in culture collections External links

[Ref.: #5161]

Culture collection no.

DSM 13777, KFCC 11116

[Ref.: #85809]

SI-ID 49522

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation from oil reservoirs of novel thermophilic anaerobes phylogenetically related to Thermoanaerobacter subterraneus: reassignment of T. subterraneus, Thermoanaerobacter yonseiensis, Thermoanaerobacter tengcongensis and Carboxydibrachium pacificum to Caldanaerobacter subterraneus gen. nov., sp. nov., comb. nov. as four novel subspecies.	Fardeau ML, Salinas MB, L'Haridon S, Jeanthon C, Verhe F, Cayol JL, Patel BKC, Garcia JL, Ollivier B	Int J Syst Evol Microbiol	10.1099/ijs.0.02711-0	2004	*
Enzymology	A novel subtilisin-like serine protease from Thermoanaerobacter yonseiensis KB-1: its cloning, expression, and biochemical properties.	Jang HJ, Kim BC, Pyun YR, Kim YS	Extremophiles	10.1007/s00792-001-0248-1	2002	*
Phylogeny	Thermoanaerobacter yonseiensis sp. nov., a novel extremely thermophilic, xylose-utilizing bacterium that grows at up to 85 degrees C.	Kim BC, Grote R, Lee DW, Antranikian G, Pyun YR	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1539	2001	*

References

#5161

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13777

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85809

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49522.1 )

* These data were automatically processed and therefore are not curated

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