Pedobacter riviphilus (KEMB 1602-396, KCTC 82079, JCM 34181)

Name: Pedobacter riviphilus (KEMB 1602-396, KCTC 82079, JCM 34181)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167922

Type strain

Strain Designation SW-16

Culture col. no. KEMB 1602-396 KCTC 82079 JCM 34181 SW-16

NCBI tax ID(s) 2766984

Special Collections JCM KCTC

Links

Pedobacter riviphilus SW-16 is a bacterium of the family Sphingobacteriaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 25092

KCTC:82079,JCM34181

@ref 20215

Last LPSN update 2026-05-29 08:46:15

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Pedobacter

Species Pedobacter riviphilus

Full scientific name Pedobacter riviphilus Im et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.9
125439	negative	98.955

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.644

Spore formation

@ref	Spore formation	Confidence
125439		99.122

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1469287v1 assembly for Pedobacter riviphilus SW-16	complete	GCA_014692875	2766984.4	2911897694	2766984	93.26

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Pedobacter riviphilus strain SW-16 16S ribosomal RNA gene, partial sequence	MN381950	1456		2606215

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1469287v1 assembly for Pedobacter riviphilus SW-16
NCBI: GCA_014692875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	82.92	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.64	no
125439	gram_stain	BacteriaNetⓘ	negative	98.96	no
125439	spore_formation	BacteriaNetⓘ	no	99.12	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pedobacter riviphilus SW-16
NCBI: GCA_014692875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.90	no
125438	anaerobic	anaerobicⓘ	no	96.77	no
125438	aerobic	aerobicⓘ	yes	89.37	no
125438	spore-forming	spore-formingⓘ	no	84.29	no
125438	thermophilic	thermophileⓘ	no	98.99	no
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pedobacter riviphilus sp. nov., isolated from stream sediment.	Im HS, Joung Y, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004989	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Pedobacter riviphilus (KEMB 1602-396, KCTC 82079, JCM 34181)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014692875

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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