Paenibacillus agri (JCM 34279, JW14, KACC 21840)

Name: Paenibacillus agri (JCM 34279, JW14, KACC 21840)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167846

Type strain

Strain Designation JW14

Culture col. no. JCM 34279 JW14 KACC 21840

NCBI tax ID(s) 2744309

Special Collections JCM

Links

Paenibacillus agri JW14 is a bacterium of the family Paenibacillaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 390859

JCM 34279

@ref 20215

Last LPSN update 2026-05-29 08:46:14

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus agri

Full scientific name Paenibacillus agri Kim et al. 2021

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	94.088

Spore formation

@ref	Spore formation	Confidence
125438		92.256

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence MT233330 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	60
Soil Samples	170
Animal Samples	73
Plant Samples	91
Total Samples	394

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1335994v1 assembly for Paenibacillus agri JW14	contig	GCA_013359945	2744309.3	2938663919	2744309	33.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Paenibacillus agri strain JW14 16S ribosomal RNA gene, partial sequence	MT233330	1482		2744309

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1335994v1 assembly for Paenibacillus agri JW14
NCBI: GCA_013359945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	yes	66.85	no
125439	gram_stain	BacteriaNetⓘ	variable	63.59	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.09	no
125439	spore_formation	BacteriaNetⓘ	yes	74.95	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus agri JW14
NCBI: GCA_013359945.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.75	no
125438	anaerobic	anaerobicⓘ	no	94.52	no
125438	aerobic	aerobicⓘ	no	52.59	no
125438	spore-forming	spore-formingⓘ	yes	92.26	no
125438	thermophilic	thermophileⓘ	no	95.30	no
125438	flagellated	motile2+ⓘ	yes	86.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus agri sp. nov., isolated from soil.	KIm KH, Seo YL, Baek JH, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004981	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus agri (JCM 34279, JW14, KACC 21840)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_013359945

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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