Tepidiforma bonchosmolovskayae (VKM B-3389, KCTC 72284, 3753O)

Name: Tepidiforma bonchosmolovskayae (VKM B-3389, KCTC 72284, 3753O)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167812

Type strain

Strain Designation 3753O, KTCT 72284

Culture col. no. VKM B-3389 KCTC 72284 3753O KTCT 72284

NCBI tax ID(s) 2601677

Special Collections KCTC

Links

Tepidiforma bonchosmolovskayae 3753O is a prokaryote of the family Tepidiformaceae.

genome sequence

Name and taxonomic classification

SI-ID 28368

KCTC 72284

@ref 20215

Last LPSN update 2025-12-16 10:10:12

Domain Bacillati

Phylum Chloroflexota

Class Tepidiformia

Order Tepidiformales

Family Tepidiformaceae

Genus Tepidiforma

Species Tepidiforma bonchosmolovskayae

Full scientific name Tepidiforma bonchosmolovskayae Kochetkova et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	99.6

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM883832v1 assembly for Tepidiforma bonchosmolovskayae 3753O	complete	GCA_008838325	2601677.3	2883312791	2601677	95.81

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tepidiforma bonchosmolovskayae 3753O
NCBI: GCA_008838325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	63.70	no
125439	motility	BacteriaNetⓘ	yes	51.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tepidiforma bonchosmolovskayae 3753O
NCBI: GCA_008838325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	53.72	no
125438	anaerobic	anaerobicⓘ	no	74.40	no
125438	aerobic	aerobicⓘ	yes	70.83	no
125438	spore-forming	spore-formingⓘ	no	64.08	no
125438	thermophilic	thermophileⓘ	no	75.50	no
125438	flagellated	motile2+ⓘ	no	60.69	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Characterization of a thermophilic and glucose-tolerant GH1 beta-glucosidase from hot springs and its prospective application in corn stover degradation.	Huang YY, Lv ZH, Zheng HZ, Zhu Q, Liu MT, Sang P, Wang F, Zhu D, Xian WD, Yin YR.	Front Microbiol	10.3389/fmicb.2023.1286682	2023
	Hot in Cold: Microbial Life in the Hottest Springs in Permafrost.	Kochetkova TV, Toshchakov SV, Zayulina KS, Elcheninov AG, Zavarzina DG, Lavrushin VY, Bonch-Osmolovskaya EA, Kublanov IV.	Microorganisms	10.3390/microorganisms8091308	2020
	Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past.	Palmer M, Covington JK, Zhou EM, Thomas SC, Habib N, Seymour CO, Lai D, Johnston J, Hashimi A, Jiao JY, Muok AR, Liu L, Xian WD, Zhi XY, Li MM, Silva LP, Bowen BP, Louie K, Briegel A, Pett-Ridge J, Weber PK, Tocheva EI, Woyke T, Northen TR, Mayali X, Li WJ, Hedlund BP.	ISME J	10.1038/s41396-023-01405-0	2023
Phylogeny	Tepidiforma bonchosmolovskayae gen. nov., sp. nov., a moderately thermophilic Chloroflexi bacterium from a Chukotka hot spring (Arctic, Russia), representing a novel class, Tepidiformia, which includes the previously uncultivated lineage OLB14.	Kochetkova TV, Zayulina KS, Zhigarkov VS, Minaev NV, Chichkov BN, Novikov AA, Toshchakov SV, Elcheninov AG, Kublanov IV	Int J Syst Evol Microbiol	10.1099/ijsem.0.003902	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tepidiforma bonchosmolovskayae (VKM B-3389, KCTC 72284, 3753O)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008838325

Genome-based predictions

Predictions

Literature

Literature

References

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