Pseudomonas schmalbachii (CIP 111980, Milli4, BCRC 81294)

Name: Pseudomonas schmalbachii (CIP 111980, Milli4, BCRC 81294)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167798

Type strain

Strain Designation Milli4

Culture col. no. CIP 111980 Milli4 BCRC 81294 JCM 34414

NCBI tax ID(s) 2816993

Special Collections JCM CIP

Links

Pseudomonas schmalbachii Milli4 is a bacterium of the family Pseudomonadaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 129321

BCRC 81294,CIP 111980,JCM 34414

@ref 20215

Last LPSN update 2026-05-29 08:46:13

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas schmalbachii

Full scientific name Pseudomonas schmalbachii Shelomi et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	94.152
125438	negative	98.5

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.539

Spore formation

@ref	Spore formation	Confidence
125439		99.695

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1758946v1 assembly for Pseudomonas schmalbachii Milli4	contig	GCA_017589465	2816993.3	8011357093	2816993	65.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Pseudomonas schmalbachii strain Milli4 16S ribosomal RNA gene, partial sequence	MW717294	1510		2816993

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1758946v1 assembly for Pseudomonas schmalbachii Milli4
NCBI: GCA_017589465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	yes	88.24	no
125439	gram_stain	BacteriaNetⓘ	negative	94.15	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	76.15	no
125439	spore_formation	BacteriaNetⓘ	no	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas schmalbachii Milli4
NCBI: GCA_017589465.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	97.17	no
125438	aerobic	aerobicⓘ	yes	92.54	no
125438	spore-forming	spore-formingⓘ	no	88.23	no
125438	thermophilic	thermophileⓘ	no	98.99	no
125438	flagellated	motile2+ⓘ	yes	89.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas schmalbachii sp. nov., isolated from the gut of a millipede (Trigoniulus corallinus) from a coconut tree.	Shelomi M, Chen WM, Chen HK, Lee HY, Young CC, Lin SY, Liaw SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005101	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas schmalbachii (CIP 111980, Milli4, BCRC 81294)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017589465

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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