Vibrio nitrifigilis (BCRC 81211, NFV-1, JCM 33628)

Name: Vibrio nitrifigilis (BCRC 81211, NFV-1, JCM 33628)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167720

Type strain

Strain Designation NFV-1

Culture col. no. BCRC 81211 NFV-1 JCM 33628

NCBI tax ID(s) 2789781

Special Collections JCM

Links

Vibrio nitrifigilis NFV-1 is a bacterium of the family Vibrionaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 286506

BCRC 81211,JCM 33628

@ref 20215

Last LPSN update 2026-05-29 08:46:12

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio nitrifigilis

Full scientific name Vibrio nitrifigilis Huang et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99
125439	negative	92.741

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.174

Spore formation

@ref	Spore formation	Confidence
125439		99.467

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1568669v1 assembly for Vibrio nitrifigilis NFV-1	contig	GCA_015686695	2789781.3	2997341433	2789781	69.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Vibrio nitrifigilis 16S ribosomal RNA gene, partial sequence	MW263928	1547		2789781

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1568669v1 assembly for Vibrio nitrifigilis NFV-1
NCBI: GCA_015686695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	yes	58.58	no
125439	gram_stain	BacteriaNetⓘ	negative	92.74	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.17	no
125439	spore_formation	BacteriaNetⓘ	no	99.47	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio nitrifigilis NFV-1
NCBI: GCA_015686695.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	92.76	no
125438	aerobic	aerobicⓘ	no	63.79	no
125438	spore-forming	spore-formingⓘ	no	85.25	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	yes	89.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio nitrifigilis sp. nov., a marine nitrogen-fixing bacterium isolated from the lagoon sediment of an islet inside an atoll.	Huang WS, Wang LT, Chen JS, Chen YT, Wei ST, Chiang YR, Wang PL, Lee TH, Lin ST, Huang L, Shieh WY	Antonie Van Leeuwenhoek	10.1007/s10482-021-01567-x	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio nitrifigilis (BCRC 81211, NFV-1, JCM 33628)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_015686695

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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