Name: Chryseobacterium binzhouense lm2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167682

Type strain:

Species: Chryseobacterium binzhouense

Strain Designation: lm2

Culture col. no.: KCTC 72529, CCTCC AB 2019126

NCBI tax ID(s): 2593646 (species)

Section

Chryseobacterium binzhouense lm2 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from activated sludge obtained wastewater treatment plant in Binzhou .

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium binzhouense**
	Full Scientific Name (LPSN)	Chryseobacterium binzhouense Meng et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69550]	Gram stain	negative

[Ref.: #69550]	Cell length	1.4-1.8 µm

[Ref.: #69550]	Cell width	0.6-0.9 µm

[Ref.: #69550]	Cell shape	rod-shaped

[Ref.: #69550]	Motility	no

[Ref.: #69550]	Colony size	1.0-1.5 mm
[Ref.: #69550]	Colony color	golden pigmented
[Ref.: #69550]	Colony shape	circular
[Ref.: #69550]	Incubation period	2 days
[Ref.: #69550]	Cultivation medium used	LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69550]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #69550]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #69550]			growth	15-45 °C
[Ref.: #69550]			optimum	30 °C

[Ref.: #69550]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #69550]			optimum	7.0-7.5
[Ref.: #69550]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69550]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69550]		NaCl		growth	0-5.0	%(w/v)
[Ref.: #69550]		NaCl		optimum	0-2.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69550]	3-methylglucose ChEBI	-	oxidation
[Ref.: #69550]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #69550]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #69550]	amygdalin ChEBI	-	builds acid from
[Ref.: #69550]	cellobiose ChEBI	-	builds acid from
[Ref.: #69550]	cellobiose ChEBI	+	carbon source
[Ref.: #69550]	citrate ChEBI	-	assimilation
[Ref.: #69550]	D-arabinose ChEBI	-	builds acid from
[Ref.: #69550]	D-fructose 6-phosphate ChEBI	-	builds acid from
[Ref.: #69550]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #69550]	D-fucose ChEBI	-	builds acid from
[Ref.: #69550]	D-fucose ChEBI	-	oxidation
[Ref.: #69550]	D-galactose ChEBI	-	builds acid from
[Ref.: #69550]	D-galactose ChEBI	-	oxidation
[Ref.: #69550]	D-glucose ChEBI	+	builds acid from
[Ref.: #69550]	D-glucose 6-phosphate ChEBI	-	oxidation
[Ref.: #69550]	D-mannose ChEBI	+	builds acid from
[Ref.: #69550]	D-mannose ChEBI	+	carbon source
[Ref.: #69550]	D-ribose ChEBI	-	builds acid from
[Ref.: #69550]	D-tagatose ChEBI	-	builds acid from
[Ref.: #69550]	D-xylose ChEBI	-	builds acid from
[Ref.: #69550]	dextrin ChEBI	+	carbon source
[Ref.: #69550]	erythritol ChEBI	-	builds acid from
[Ref.: #69550]	esculin hydrolysate	+	builds acid from
[Ref.: #69550]	gelatin ChEBI	+	carbon source
[Ref.: #69550]	gentiobiose ChEBI	+	builds acid from
[Ref.: #69550]	gentiobiose ChEBI	+	carbon source
[Ref.: #69550]	glycogen ChEBI	+	builds acid from
[Ref.: #69550]	glycyl-L-proline ChEBI	+	carbon source
[Ref.: #69550]	glycyl-L-proline ChEBI	+	oxidation
[Ref.: #69550]	hydrogen sulfide ChEBI	-	assimilation
[Ref.: #69550]	indole ChEBI	-
[Ref.: #69550]	isocitrate ChEBI	-	assimilation
[Ref.: #69550]	L-arabinose ChEBI	-	builds acid from
[Ref.: #69550]	L-arginine ChEBI	+	carbon source
[Ref.: #69550]	L-arginine ChEBI	+	oxidation
[Ref.: #69550]	L-aspartate ChEBI	+	carbon source
[Ref.: #69550]	L-fucose ChEBI	-	builds acid from
[Ref.: #69550]	L-fucose ChEBI	+	carbon source
[Ref.: #69550]	L-glutamate ChEBI	+	carbon source
[Ref.: #69550]	L-rhamnose ChEBI	-	oxidation
[Ref.: #69550]	L-sorbose ChEBI	-	builds acid from
[Ref.: #69550]	L-xylose ChEBI	-	builds acid from
[Ref.: #69550]	maltose ChEBI	+	builds acid from
[Ref.: #69550]	maltose ChEBI	+	carbon source
[Ref.: #69550]	mannitol ChEBI	-	builds acid from
[Ref.: #69550]	melibiose ChEBI	-	oxidation
[Ref.: #69550]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #69550]	pyruvate ChEBI	-	hydrolysis
[Ref.: #69550]	sorbitol ChEBI	-	builds acid from
[Ref.: #69550]	spectinomycin ChEBI	-	oxidation
[Ref.: #69550]	starch ChEBI	+	builds acid from
[Ref.: #69550]	troleandomycin ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69550]		hydrogen sulfide ChEBI	no
[Ref.: #69550]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #69550]	acid phosphatase	+	3.1.3.2
[Ref.: #69550]	alkaline phosphatase	+	3.1.3.1
[Ref.: #69550]	alpha-glucosidase	-	3.2.1.20
[Ref.: #69550]	beta-glucosidase	-	3.2.1.21
[Ref.: #69550]	beta-N-acetylgalactosaminidase	-
[Ref.: #69550]	catalase	+	1.11.1.6
[Ref.: #69550]	chymotrypsin	+	3.4.4.5
[Ref.: #69550]	cystine arylamidase	+	3.4.11.3
[Ref.: #69550]	cytochrome oxidase	+	1.9.3.1
[Ref.: #69550]	esterase (C 4)	+
[Ref.: #69550]	esterase Lipase (C 8)	+
[Ref.: #69550]	gelatinase	+
[Ref.: #69550]	leucine arylamidase	+	3.4.11.1
[Ref.: #69550]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #69550]	trypsin	-	3.4.21.4
[Ref.: #69550]	tryptophan deaminase	+	4.1.99.1
[Ref.: #69550]	urease	-	3.5.1.5
[Ref.: #69550]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69550]

Fatty acid	Percentage
C15:0 iso	40.7
C17:1 iso w9c	15.6
C17:0 iso 3OH	13.9
C15:0 iso 2OH/ C16:1 w7c	6.8
C16:0	3.5
C15:0 iso 3OH	3.2
C18:1 w9c	1.7
C16:0 iso	1.5
C13:0 iso	1.4
C16:0 3OH	1.3
C17:0 iso	1.2
C16:1 w5c	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69550]	Sample type/isolated from	activated sludge obtained wastewater treatment plant in Binzhou (Shandong Province, PR China)
[Ref.: #69550]	Geographic location (country and/or sea, region)	Shandong Province
[Ref.: #69550]	Country	China
[Ref.: #69550]	Country ISO 3 Code	CHN
[Ref.: #69550]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Chryseobacterium binzhouense 16S ribosomal RNA gene, partial sequence	MK226528	1415	ENA	2593646 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69550]	genome sequence	VKOG00000000		GenBank	2593646 tax ID
[Ref.: #66792]	Chryseobacterium binzhouense LM2	GCA_007474545	contig	GenBank	2593646 tax ID	*

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GC-content

34.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium binzhouense LM2 NCBI: GCA_007474545.1
[Ref.: #69480]	motile	no	91.175	no
[Ref.: #69480]	flagellated	no	96.057	no
[Ref.: #69480]	gram-positive	no	98.414	no
[Ref.: #69480]	anaerobic	no	99.046	no
[Ref.: #69480]	aerobic	yes	85.206	no
[Ref.: #69480]	halophile	no	92.836	no
[Ref.: #69480]	spore-forming	no	95.297	no
[Ref.: #69480]	glucose-util	yes	86.725	no
[Ref.: #69480]	thermophile	no	99.257	no
[Ref.: #69480]	glucose-ferment	no	93.518	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

KCTC 72529, CCTCC AB 2019126

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium binzhouense sp. nov., isolated from activated sludge.	Meng D, Liu YL, Li RR, Gu PF, Fan XY, Huang ZS, Du ZJ, Li Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.003800	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69550

Dong Meng, Yu-Ling Liu, Rui-Rui Li, Peng-Fei Gu, Xiang-Yu Fan, Zhao Song Huang, Zong-Jun Du and Qiang Li: Chryseobacterium binzhouense sp. nov., isolated from activated sludge. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003800 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium binzhouense LM2

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