Planifilum fimeticola (DSM 44946, ATCC BAA-969, JCM 12507)

Name: Planifilum fimeticola (DSM 44946, ATCC BAA-969, JCM 12507)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16752

Type strain

Strain Designation H0165

Culture col. no. DSM 44946 ATCC BAA-969 JCM 12507 H0165 BCRC 16827

NCBI tax ID(s) 201975

Special Collections DSMZ JCM Literature strains

History <- A. Nakamura <- K. Hatayama; H0165 A. Nakamura H0165.

Links

Planifilum fimeticola H0165 is an aerobe, spore-forming, thermophilic prokaryote that was isolated from a hyperthermal compost.

spore-forming Gram-positive aerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 265620

ATCC BAA-969,JCM 12507,DSM 44946,BCRC 16827,CCRC 16827

@ref 20215

Last LPSN update 2025-12-16 09:50:55

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Thermoactinomycetaceae

Genus Planifilum

Species Planifilum fimeticola

Full scientific name Planifilum fimeticola Hatayama et al. 2005

Morphology

Cell morphology

31346

Gram stainpositive

Pigmentation

31346

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12110	LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)		Medium recipe at MediaDive	Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
12110	CZAPEK PEPTONE AGAR (DSMZ Medium 83)		Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12110	positive	growth	60	thermophilic
31346	positive	growth	50-65	thermophilic
31346	positive	optimum	59	thermophilic
67770	positive	growth	55	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
12110	aerobe
31346	aerobe
125439	facultative anaerobe	94.6

Spore formation

31346

Spore formationyes

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12110	a hyperthermal compost	Motobu, Okinawa prefecture	Japan	JPN	Asia
67770	Hyperthermal compost	Motobu, Okinawa	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB088364 (>99% sequence identity) for Planifilum fimeticola subclade from Microbeatlas

Aquatic Samples	628
Soil Samples	2431
Animal Samples	933
Plant Samples	699
Total Samples	4691

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12110	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM300190v1 assembly for Planifilum fimeticola DSM 44946	scaffold	GCA_003001905	201975.3	2728369512	201975	50.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12110	Planifilum fimeticola gene for 16S rRNA, partial sequence, strain:H0165	AB088364	1510		201975

GC content

@ref	GC-content (mol%)	Method
12110	60.3	high performance liquid chromatography (HPLC)
31346	60.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Planifilum fimeticola DSM 44946
NCBI: GCA_003001905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.70	no
125439	motility	BacteriaNetⓘ	yes	69.90	no
125439	gram_stain	BacteriaNetⓘ	positive	67.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planifilum fimeticola strain DSM 44946
PATRIC: 201975.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.02	yes
125438	anaerobic	anaerobicⓘ	no	85.24	no
125438	spore-forming	spore-formingⓘ	yes	84.28	no
125438	aerobic	aerobicⓘ	yes	74.77	no
125438	thermophilic	thermophileⓘ	yes	60.79	no
125438	flagellated	motile2+ⓘ	no	57.48	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft genome sequence and morphological data of Planifilum fimeticola PLACP1, a thermophilic chloramphenicol-resistant bacterium isolated from thermophilic sludge.	Tseng HC, Matsutani M, Fujimoto N, Ohnishi A.	Data Brief	10.1016/j.dib.2024.110447	2024
Phylogeny	Polycladomyces abyssicola gen. nov., sp. nov., a thermophilic filamentous bacterium isolated from hemipelagic sediment.	Tsubouchi T, Shimane Y, Mori K, Usui K, Hiraki T, Tame A, Uematsu K, Maruyama T, Hatada Y	Int J Syst Evol Microbiol	10.1099/ijs.0.043596-0	2012
Phylogeny	Planifilum yunnanense sp. nov., a thermophilic thermoactinomycete isolated from a hot spring.	Zhang YX, Dong C, Biao S	Int J Syst Evol Microbiol	10.1099/ijs.0.64646-0	2007
Phylogeny	Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost.	Hatayama K, Shoun H, Ueda Y, Nakamura A	Int J Syst Evol Microbiol	10.1099/ijs.0.63367-0	2005

References

#12110	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44946
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27660	IJSEM 2101 2005 ( DOI 10.1099/ijs.0.63367-0 , PubMed 16166716 )
#31346	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27660
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Planifilum fimeticola (DSM 44946, ATCC BAA-969, JCM 12507)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003001905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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