Actinomyces trachealis (JCM 34357, zg-993, GDMCC 1.1956)

Name: Actinomyces trachealis (JCM 34357, zg-993, GDMCC 1.1956)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167494

Type strain

Strain Designation zg-993

Culture col. no. JCM 34357 zg-993 GDMCC 1.1956

NCBI tax ID(s) 2763540

Special Collections JCM

Links

Actinomyces trachealis zg-993 is a bacterium of the family Actinomycetaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393531

JCM 34357

@ref 20215

Last LPSN update 2026-05-29 08:46:09

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Actinomyces

Species Actinomyces trachealis

Full scientific name Actinomyces trachealis Zhou et al. 2021

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	94.375
125439	96.939
125439	98.11	positive

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	95.041

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1571147v2 assembly for Actinomyces trachealis zg-993	complete	GCA_015711475	2763540.3	2763540	97.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Actinomyces trachealis strain zg-993 16S ribosomal RNA gene, partial sequence	MT894139	1518		2763540

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1571147v2 assembly for Actinomyces trachealis zg-993
NCBI: GCA_015711475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	96.94	no
125439	gram_stain	BacteriaNetⓘ	positive	98.11	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.04	no
125439	spore_formation	BacteriaNetⓘ	no	85.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomyces trachealis zg-993
NCBI: GCA_015711475.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.65	no
125438	anaerobic	anaerobicⓘ	no	70.94	no
125438	aerobic	aerobicⓘ	no	87.22	no
125438	spore-forming	spore-formingⓘ	no	84.66	no
125438	thermophilic	thermophileⓘ	no	94.17	no
125438	flagellated	motile2+ⓘ	no	94.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of isolates of members of the genus Actinomyces from Marmota himalayana: description of Actinomyces faecalis sp. nov., Actinomyces respiraculi sp. nov., and Actinomyces trachealis sp. nov.	Zhou J, Zhang S, Zhang G, Yang J, Lai XH, Pu J, Jin D, Lu S, Huang Y, Zhu W, Huang Y, Xu M, Lei W, Cheng Y, Liu L, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004875	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Actinomyces trachealis (JCM 34357, zg-993, GDMCC 1.1956)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_015711475

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media