Name: Laceyella sediminis RHA1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16748

Type strain:

Species: Laceyella sediminis

Strain Designation: RHA1

Culture col. no.: DSM 45263, CCTCC AA 208058

Strain history: <- L.-B. Lin, YIM; RHA1

NCBI tax ID(s): 573074 (species)

Section

Laceyella sediminis RHA1 is an aerobe, spore-forming, thermophilic bacterium that was isolated from sediment sample of a hot spring .

Gram-positive
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Thermoactinomycetaceae*
	Genus	*Laceyella*
	Species	**Laceyella sediminis**
	Full Scientific Name (PNU)	Laceyella sediminis Chen et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30013]	Gram stain	positive
[Ref.: #30013]	Motility	no

[Ref.: #30013]

Pigment production

Multimedia content

[Ref.: #16035]

Caption:

Medium 830 55°C

[Ref.: #16035]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16035]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16035]

Culture medium growth

[Ref.: #16035]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16035]

Culture medium composition

expand / minimize

[Ref.: #16035]

Culture medium

SULFOLOBUS MEDIUM (DSMZ Medium 88)

[Ref.: #16035]

Culture medium growth

[Ref.: #16035]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16035]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16035]	growth	55 °C
[Ref.: #30013]	growth	28-65 °C
[Ref.: #30013]	optimum	55 °C

[Ref.: #16035]	Temperature range	thermophilic
[Ref.: #30013]	Temperature range	thermophilic

	pH	Kind of pH		pH	pH range
[Ref.: #30013]			optimum	7
[Ref.: #30013]			growth	5.0-9.0	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30013]

Oxygen tolerance

aerobe

[Ref.: #30013]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30013]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30013]	gelatin ChEBI	+	carbon source
[Ref.: #30013]	lactose ChEBI	+	carbon source
[Ref.: #30013]	maltose ChEBI	+	carbon source
[Ref.: #30013]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #30013]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16035]	Sample type/isolated from	sediment sample of a hot spring (55 °C, pH 6.5)
[Ref.: #16035]	Geographic location (country and/or sea, region)	Yunnan Province, Tengchong county
[Ref.: #16035]	Country	China
[Ref.: #16035]	Country ISO 3 Code	CHN
[Ref.: #16035]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ422144 (>99% sequence identity) for Laceyella from Microbeatlas

Aquatic Samples	1320
Soil Samples	7909
Animal Samples	2143
Plant Samples	2298
Total Samples	13670

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16035]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16035]	Laceyella sediminis strain RHA1 16S ribosomal RNA gene, partial sequence	FJ422144	1428	ENA	573074 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Laceyella sediminis RHA1	GCA_003003125	contig	GenBank	573074 tax ID	*
[Ref.: #66792]	Laceyella sediminis DSM 45263	2728369511	draft	JGI IMG/M	573074 tax ID	*
[Ref.: #66792]	Laceyella sediminis CCTCC AA 208058	2784132168	draft	JGI IMG/M	573074 tax ID	*

[Ref.: #16035]	GC-content	47.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30013]	GC-content	47.9 mol%

Availability in culture collections External links

[Ref.: #16035]

Culture collection no.

DSM 45263, CCTCC AA 208058

[Ref.: #20218]

Associated Passport(s) in StrainInfo

868666, 868665

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Laceyella sediminis sp. nov., a thermophilic bacterium isolated from a hot spring.	Chen JJ, Lin LB, Zhang LL, Zhang J, Tang SK, Wei YL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.028282-0	2011	*

References

#16035

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45263

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30013

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26377 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26377

IJSEM 38 2012 ( DOI 10.1099/ijs.0.028282-0 , PubMed 21317276 )

* These data were automatically processed and therefore are not curated

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