Crassaminicella thermophila (JCM 34213, MCCC 1K04191, SY095)

Name: Crassaminicella thermophila (JCM 34213, MCCC 1K04191, SY095)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167442

Type strain

Strain Designation SY095

Culture col. no. JCM 34213 MCCC 1K04191 SY095

NCBI tax ID(s) 2599308

Special Collections JCM

Links

Crassaminicella thermophila SY095 is a bacterium of the family Clostridiaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132979

JCM 34213

@ref 20215

Last LPSN update 2026-05-29 08:46:08

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Crassaminicella

Species Crassaminicella thermophila

Full scientific name Crassaminicella thermophila Li et al. 2021

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.503

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM815232v1 assembly for Crassaminicella thermophila SY095	complete	GCA_008152325	2599308.3	2883367716	2599308	94.78

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Crassaminicella thermophila strain SY095 16S ribosomal RNA gene, partial sequence	MN235899	1421		2599308

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM815232v1 assembly for Crassaminicella thermophila SY095
NCBI: GCA_008152325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	yes	69.67	no
125439	gram_stain	BacteriaNetⓘ	positive	59.55	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.50	no
125439	spore_formation	BacteriaNetⓘ	yes	58.99	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Crassaminicella thermophila SY095
NCBI: GCA_008152325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.02	no
125438	anaerobic	anaerobicⓘ	yes	89.53	no
125438	aerobic	aerobicⓘ	no	96.53	no
125438	spore-forming	spore-formingⓘ	yes	63.44	no
125438	thermophilic	thermophileⓘ	no	54.98	no
125438	flagellated	motile2+ⓘ	yes	77.63	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Crassaminicella thermophila sp. nov., a moderately thermophilic bacterium isolated from a deep-sea hydrothermal vent chimney and emended description of the genus Crassaminicella.	Li XG, Lin J, Bai SJ, Dai J, Jiao ZX, Tang HZ, Qi XQ, Zhang WJ, Liu M, Xu JS, Wu LF	Int J Syst Evol Microbiol	10.1099/ijsem.0.005112	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Crassaminicella thermophila (JCM 34213, MCCC 1K04191, SY095)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008152325

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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