Chitinophaga silvatica (K2CV101002-2, GDMCC 1.1288, JCM 32696)

Name: Chitinophaga silvatica (K2CV101002-2, GDMCC 1.1288, JCM 32696)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167424

Type strain

Strain Designation K2CV101002-2

Culture col. no. K2CV101002-2 GDMCC 1.1288 JCM 32696

NCBI tax ID(s) 2282649

Special Collections JCM

Links

Chitinophaga silvatica K2CV101002-2 is a bacterium of the family Chitinophagaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131821

JCM 32696

@ref 20215

Last LPSN update 2026-05-29 08:46:08

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Chitinophaga

Species Chitinophaga silvatica

Full scientific name Chitinophaga silvatica Yao et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.453

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.243
125438	aerobe	90.221

Spore formation

@ref	Spore formation	Confidence
125439		98.541

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM341989v1 assembly for Chitinophaga silvatica GDMCC 1.1288	contig	GCA_003419895	2282649.3	2843486225	2282649	73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Chitinophaga silvatica 16S ribosomal RNA gene, partial sequence	MH553386	1485		2282649

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM341989v1 assembly for Chitinophaga silvatica GDMCC 1.1288
BV-BRC: 2282649.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	79.75	no
125439	gram_stain	BacteriaNetⓘ	negative	86.59	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.24	no
125439	spore_formation	BacteriaNetⓘ	no	98.54	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chitinophaga sp. GDMCC 1.1288
PATRIC: 2282649.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.45	no
125438	anaerobic	anaerobicⓘ	no	96.71	no
125438	spore-forming	spore-formingⓘ	no	88.90	no
125438	aerobic	aerobicⓘ	yes	90.22	no
125438	thermophilic	thermophileⓘ	no	95.91	no
125438	flagellated	motile2+ⓘ	no	87.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chitinophaga silvatica sp. nov., isolated from forest soil, and reclassification of Chitinophaga extrema as a later heterotypic synonym of Chitinophaga solisilvae.	Yao Y, Zhong X, Li H, Fan W, Xiang Q, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004865	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chitinophaga silvatica (K2CV101002-2, GDMCC 1.1288, JCM 32696)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003419895

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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