Name: Camelimonas lactis M 2040
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1674

Type strain:

Species: Camelimonas lactis

Strain Designation: M 2040

Culture col. no.: DSM 22958, CCM 7696, CCUG 58638

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; M 2040 <- R. Wernery

NCBI tax ID(s): 659006 (species)

SI-ID 363914

LMG 25415, CCM 7696, CCUG 58638, DSM 22958

Section

Camelimonas lactis M 2040 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from camel milk.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Chelatococcaceae*
	Genus	*Camelimonas*
	Species	**Camelimonas lactis**
	Full Scientific Name (LPSN)	Camelimonas lactis Kämpfer et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29647]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.98

[Ref.: #29647]	Cell length	2 µm

[Ref.: #29647]	Cell width	1 µm

[Ref.: #29647]	Cell shape	rod-shaped

[Ref.: #29647]	Motility	no

[Ref.: #61729]

Incubation period

2 days

[Ref.: #29647]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16636]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16636]

Culture medium growth

[Ref.: #16636]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16636]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16636]	growth	28 °C
[Ref.: #29647]	growth	15-37 °C
[Ref.: #29647]	optimum	25-30 °C
[Ref.: #61729]	growth	37 °C

[Ref.: #16636]	Temperature range	mesophilic
[Ref.: #29647]	Temperature range	mesophilic
[Ref.: #61729]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29647]			optimum	7
[Ref.: #29647]			growth	5.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29647]	Oxygen tolerance	aerobe
[Ref.: #61729]	Oxygen tolerance	aerobe

[Ref.: #29647]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

[Ref.: #29647]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29647]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #29647]	acetate ChEBI	+	carbon source
[Ref.: #29647]	adipate ChEBI	+	carbon source
[Ref.: #29647]	alanine ChEBI	+	carbon source
[Ref.: #29647]	aspartate ChEBI	+	carbon source
[Ref.: #29647]	citrate ChEBI	+	carbon source
[Ref.: #29647]	esculin ChEBI	+	hydrolysis
[Ref.: #29647]	glucose ChEBI	+	carbon source
[Ref.: #29647]	lactate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29647]		cytochrome oxidase	+	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	CO2 fixation in Crenarchaeota	100	9 of 9
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	vitamin B12 metabolism	76.47	26 of 34
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	threonine metabolism	70	7 of 10
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	purine metabolism	62.77	59 of 94
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	NAD metabolism	61.11	11 of 18
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	pyrimidine metabolism	60	27 of 45
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	starch degradation	50	5 of 10
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	histidine metabolism	48.28	14 of 29
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	isoprenoid biosynthesis	38.46	10 of 26
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16636]	Sample type/isolated from	camel milk
[Ref.: #16636]	Country	United Arab Emirates
[Ref.: #16636]	Country ISO 3 Code	ARE
[Ref.: #16636]	Continent	Asia

[Ref.: #61729]	Sample type/isolated from	Camel milk
[Ref.: #61729]	Sampling date	2008
[Ref.: #61729]	Country	United Arab Emirates
[Ref.: #61729]	Country ISO 3 Code	ARE
[Ref.: #61729]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Mammals	-
#Host Body Product	#Fluids	#Milk

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN430422 (>99% sequence identity) for Camelimonas from Microbeatlas

Aquatic Samples	165
Soil Samples	340
Animal Samples	270
Plant Samples	17
Total Samples	792

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16636]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16636]	Alpha proteobacterium M 2040 partial 16S rRNA gene, strain M 2040T	FN430422	1435	ENA	659006 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Camelimonas lactis DSM 22958	GCA_004342915	contig	GenBank	659006 tax ID	*
[Ref.: #66792]	Camelimonas lactis strain DSM 22958	659006.3	wgs	PATRIC	659006 tax ID	*
[Ref.: #66792]	Camelimonas lactis DSM 22958	2799112273	draft	JGI IMG/M	659006 tax ID	*

[Ref.: #16636]

GC-content

65 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Camelimonas lactis strain DSM 22958 PATRIC: 659006.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Camelimonas lactis strain DSM 22958 PATRIC: 659006.3
[Ref.: #69480]	gram-positive	no	98.32	yes
[Ref.: #69480]	anaerobic	no	97.56	yes
[Ref.: #69480]	halophile	no	91.034	no
[Ref.: #69480]	spore-forming	no	95.327	yes
[Ref.: #69480]	glucose-util	yes	68.492	no
[Ref.: #69480]	thermophile	no	94.537	yes
[Ref.: #69480]	flagellated	no	94.775	yes
[Ref.: #69480]	motile	no	87.23	yes
[Ref.: #69480]	aerobic	yes	85.897	yes
[Ref.: #69480]	glucose-ferment	no	90.489	no

Availability in culture collections External links

[Ref.: #16636]

Culture collection no.

DSM 22958, CCM 7696, CCUG 58638

[Ref.: #71321]

SI-ID 363914

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Camelimonas fluminis sp. nov., a cyhalothrin-degrading bacterium isolated from river water.	Zhang L, Song M, Cao Q, Wu S, Zhao Y, Huang JW, Chen K, Li SP, Xia ZY, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijs.0.000384	2015	*
Phylogeny	Camelimonas abortus sp. nov., isolated from placental tissue of cattle.	Kampfer P, Scholz HC, Lodders N, Loncaric I, Whatmore AM, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.034389-0	2011	*
Phylogeny	Camelimonas lactis gen. nov., sp. nov., isolated from the milk of camels.	Kampfer P, Scholz HC, Langer S, Wernery U, Wernery R, Johnson B, Joseph M, Lodders N, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.017806-0	2009	*

References

#16636

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22958

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29647

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26036 (see below)

#61729 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58638

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71321

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363914.1 )

#26036

IJSEM 2382 2010 ( DOI 10.1099/ijs.0.017806-0 , PubMed 19933583 )

* These data were automatically processed and therefore are not curated

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Camelimonas lactis strain DSM 22958

Camelimonas lactis strain DSM 22958

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